Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0010 ATGCCAAGGCCGAGTGCTAATAGCAAAGCAGTGGAGACAGAGGAGAGTTGTTGTTTTGTTTGGAAAGGAATGAAGGAGTTTGATAATTACGAGAGAAAGGAAAAGAAGAAGAAGCAGTGGTCAATGAAGACATCAACGGAGCCACATCCCTGCACAGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCACTTTTCGGACACATGCGATGTCACCCAGAGCGTCAATGGAGAGGGATAAATCCACCACCAAATGTAAGGTTGATGAGAAGAAAAGAAGAAGAAGAAATGAGTGAGGAAGAGCATGATGTGGCAGCCTGTTTGCTCCTGCTTTCCAATGTGAGACAAAGAGAGGAAGATGTTCATTTCGAGTATTGTAGTTGCAACAAGGTATTCGAGTCTCACCAGGCCTTAGGAGGACACCGTGCCAGTCACAAGAATGTCAAGGGCTATTTTGAACATCCATAG 465 0.4559 MPRPSANSKAVETEESCCFVWKGMKEFDNYERKEKKKKQWSMKTSTEPHPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNVRLMRRKEEEEMSEEEHDVAACLLLLSNVRQREEDVHFEYCSCNKVFESHQALGGHRASHKNVKGYFEHP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0010 154 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 31 151 - -
Aed3g0010 154 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 31 151 - -
Aed3g0010 154 Gene3D Classic Zinc Finger 26 107 - -
Aed3g0010 154 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Aed3g0010 154 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Aed3g0010 154 Pfam C2H2-type zinc finger 49 73 - -
Aed3g0010 154 Pfam C2H2-type zinc finger 127 145 - -
Aed3g0010 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Aed3g0010 154 SMART c2h2final6 49 71 IPR013087 -
Aed3g0010 154 SMART c2h2final6 122 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0010 Aed-Chr3 78170 78888 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0010 50 151 C2H2 Transcription Factor Family AT4G35280 63.158 4.91e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g0010 zf-C2H2_6 1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0010 - - gmx:100792631 179.874