Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2710 ATGGCTTGTCTTTCTTTAGGGTTTGGATTTGGAGGCTTAGCCTCAGCAATCTGGGTCAGCCATAACTCCATGGAGTTGATGCAACAAGTTAAAGGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACTTGATGGACTTGTCACTGGGGAGCAACAAGCTAGAAGAGGTAGAAGGAGGAGGAGTGGTTCATCAACATCAACATCCTCAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTAGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTGGACTCCTCATCGAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGGGATTTAAATAGACATAGGTTGTACATAGATTGGAGGAGAAGGTCCGATCATGCTCATGCTCATGGTCCTGATCCTTCAACTTCTCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCGCCATGCCACCTCGCTACCACCACGATCATCACTTTCATCACCATCATCTCAATTCTTACAACAACCTCTTCACTTTTCAGCAACACCAGCAGCAACAGTACCTTGGTGCTGCCGCTGCTCATCATCACAACAACTATGCTGATCAGCAGAATTCGGGATCTGGCTCACTCTATTACCTCAGGTCAATGGGTGCTGATCAAAACTTGCAAGGGATCAGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTTCCGGTTAACGTTAACGTTGCCCATCACAATAATCGCCGTGGGCATGGGGGCGTCACGAGTGGTGGTGGTGGTGCTACTACTAGTAGTGGAAAACGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGTAGAAGATTCCAAAGGCCTGTCCTCGGATTCGGCAGCACATTTGACTACAGTGGCTAATTCACTTCCCTCAGCTTCCACTTCTTCTTCTTCTCTTCAGCGCTTGAGGGTGCCACATGAAGGGGGCACTGGGTCTTCGCTTCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGCCAGTAA 1218 0.4901 MACLSLGFGFGGLASAIWVSHNSMELMQQVKGLHQQDAASNFGKKLDLMDLSLGSNKLEEVEGGGVVHQHQHPQEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLNRHRLYIDWRRRSDHAHAHGPDPSTSPLFLPSIRWYSLPPAMPPRYHHDHHFHHHHLNSYNNLFTFQQHQQQQYLGAAAAHHHNNYADQQNSGSGSLYYLRSMGADQNLQGIRGNNIVPMIIDSVPVNVNVAHHNNRRGHGGVTSGGGGATTSSGKRLRLFGVNMECASSVEDSKGLSSDSAAHLTTVANSLPSASTSSSSLQRLRVPHEGGTGSSLLFDLDPSLQYHRQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2710 405 MobiDBLite consensus disorder prediction 366 381 - -
Aed2g2710 405 Gene3D - 76 195 IPR015300 -
Aed2g2710 405 SMART B3_2 83 188 IPR003340 GO:0003677
Aed2g2710 405 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 68 366 - -
Aed2g2710 405 MobiDBLite consensus disorder prediction 366 405 - -
Aed2g2710 405 ProSiteProfiles B3 DNA-binding domain profile. 83 188 IPR003340 GO:0003677
Aed2g2710 405 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 366 IPR044800 GO:0003700
Aed2g2710 405 Pfam B3 DNA binding domain 83 187 IPR003340 GO:0003677
Aed2g2710 405 CDD B3_DNA 81 170 IPR003340 GO:0003677
Aed2g2710 405 SUPERFAMILY DNA-binding pseudobarrel domain 80 186 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2710 Aed-Chr2 29081566 29084585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2710 48 345 RAV Transcription Factor Family AT2G46870 49.007 1.93e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed2g2710 B3 1.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2710 - - gmx:100781489 483.796