Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2709 ATGGAGGATGGGAGTAGGGTTCCGGCGGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAGGACATACCGTGTGATGATTTCATTGATTTTGATGTCTCATCCATCGTCTCTGACCAGCCCGACAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTCTGGACAGCATCAAGAACGGTGATGGTCTTCCTCTCAATCATGCTGCTGCTGCTGAACCACCCAATATTAATGTCACTGCAGGAGCAGAAGAAGAAGAAGGAGAACTGTGCTTGCCTAATAATGGTGCCACTCCCGAGGATGGGGGGAATCATCATGCTCCTGCTGACGCTTCTCGGACTAATGGGAATGAACGGGCACCCACTCTGAATGGAGGCCATGATTTTGATGCTGAAGAAAGGTCCTGCAAAAGGGCTCGTCTTGGTGGCGTCTACAAGAATGACAGGCCTTATTATGGTAGAGGGAATTACCAACCCAAGGAGAGGGAGAGGTGTTTTAATAATAACAGGAAGAGGCCGCGGGATAGGGATGAGATTGACAGGAGGGATAAGGATGGTGCTGGAAGGAAAAGAGAACATTATGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAACATAGAGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGATATGGTCTTTCGCATGGGTGCTTGGGAACCTGATTGTAACCGAGAAGACAAAATAATGACCAATGACACCAAACTGGACAACAATGGAAAGCTTGATAAGAAGTCCGAGGAGGCTAAGGACAGGGTTCCTGAGGAAAAAGCTAGGCAGTATCAGTTGGATGTTCTTGACCAGGCAAAGAGGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGAAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGGATAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCAAGTTGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACCGCTCAAATTCTCTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCCGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACGACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGTAGGGAGCTGGAGAAACATGTACCGATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCTGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGTCAATGGTGTGCATATAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAATTACCAGCTTGATGTCAAGTTTCAGGAAACTTATCTGAGTAAAGTTGTCTCGCTTCTGAAATGCCAACTCTCAGAGGGTGCAGTTTCTGACAAAGATGCTGGTATTGATGACTCAGAGAATGGTGCAGCTCAAAGTGGGTCTGAACATGAAGAGATGGAAGAAGGCGAGCTTCCAGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCACTTAGTTTTGTGAAGTGTGCAAGTTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAATTCCGTGATGGGCGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTAGCATACATTCAATCCAGGGGGCGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGACAATTTATCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTAATTTCCGTCGACACCCGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGCCTAAATTCTGCTGTCGGTCTTATCCACTTCTACTGCTCTCAACTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAAAAACCAGGAGGTCCCACGGAATATTCTTGCAAGCTTCAATTGCCGTGTAATGCACCGTTTGAAAATCTTGAGGGTCCAATATGCAGTTCTATGCGTTTGGCACAACAGGCATGCCATCATTTATTATGA 2823 0.4488 MEDGSRVPAGDDPSYWLDACEDIPCDDFIDFDVSSIVSDQPDNPSNQDFFGGIDKILDSIKNGDGLPLNHAAAAEPPNINVTAGAEEEEGELCLPNNGATPEDGGNHHAPADASRTNGNERAPTLNGGHDFDAEERSCKRARLGGVYKNDRPYYGRGNYQPKERERCFNNNRKRPRDRDEIDRRDKDGAGRKREHYGAVGRRDVRDRDWRDREHRGYWERDKSGSNDMVFRMGAWEPDCNREDKIMTNDTKLDNNGKLDKKSEEAKDRVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLDKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRRELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAVSDKDAGIDDSENGAAQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQACHHLL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2709 940 Gene3D - 268 512 IPR027417 -
Aed2g2709 940 MobiDBLite consensus disorder prediction 246 270 - -
Aed2g2709 940 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 869 940 IPR005034 GO:0016891
Aed2g2709 940 MobiDBLite consensus disorder prediction 86 133 - -
Aed2g2709 940 PANTHER DICER-RELATED 234 936 - -
Aed2g2709 940 MobiDBLite consensus disorder prediction 622 652 - -
Aed2g2709 940 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 681 841 IPR001650 -
Aed2g2709 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 808 IPR027417 -
Aed2g2709 940 CDD SF2_C_dicer 674 804 - -
Aed2g2709 940 MobiDBLite consensus disorder prediction 157 199 - -
Aed2g2709 940 Gene3D Dicer dimerisation domain 864 938 IPR038248 -
Aed2g2709 940 Pfam Type III restriction enzyme, res subunit 281 440 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aed2g2709 940 SMART ultradead3 270 473 IPR014001 -
Aed2g2709 940 CDD DEXHc_dicer 273 472 - -
Aed2g2709 940 Pfam Helicase conserved C-terminal domain 677 794 IPR001650 -
Aed2g2709 940 Pfam Dicer dimerisation domain 869 936 - -
Aed2g2709 940 Gene3D - 667 833 IPR027417 -
Aed2g2709 940 MobiDBLite consensus disorder prediction 149 199 - -
Aed2g2709 940 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 234 936 - -
Aed2g2709 940 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 458 IPR014001 -
Aed2g2709 940 SMART helicmild6 710 796 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2709 Aed-Chr2 29049749 29061550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2709 693 836 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.16e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2709 K11592 - gmx:100811631 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2709 2 29049749 29061550 Aed2g2709 2 29049749 29061550 ECH