Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2702 ATGGCATTGGCAGCTAATGCTACTCTTTCTCAGTCTCACCCCTTCACTTCTTCCACCTTGCTGAAGCACAACCCACAACTCGGAGCTGCTTCGAAACGATTCGTTTCCTGTTCTGCAGGGCCTTTGTGCCTAGGGGTTAGGGCTTTCAGTTTCAATGTCTCGGCGGCGGTGCTGGGTGAAGATGAAACGTGGAAGCGAGAAAGACCAACCGAAGTGTACGTTTGCAACCTTCCAAGAAGCTGTGACACGCAACACCTACTTCAAATGTTCAGCCCTCACGGAGCCGTTCTCTATGCCGAGGTTTGCCGAAATGCGGAGACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCATCCATTAACTCAGCAAGAAAAGCAATTGCTGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCGGGTTAGATTTTCGGCTGAGATGAATCCTAAGAGGAGGAATCTTGAAACAATGAACTCGTCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCAAAGAGTGCTGGGCCTCAAGACTTGAAACAACTCTTTAGTACATTTGGCAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAAACAGAACGCGATGCAGCAATGTCACTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTCATTAGAGACGGTGTAGAGAGAGAAGACTGA 762 0.4724 MALAANATLSQSHPFTSSTLLKHNPQLGAASKRFVSCSAGPLCLGVRAFSFNVSAAVLGEDETWKRERPTEVYVCNLPRSCDTQHLLQMFSPHGAVLYAEVCRNAETGESRGSAYVTMASINSARKAIAALDASDVGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSKSAGPQDLKQLFSTFGNVASVRVLQDLRKGNRRVYAFVSYHSETERDAAMSLNGTEFFGRVLVIRDGVERED 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2702 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Aed2g2702 253 PANTHER OS02G0815200 PROTEIN 57 253 - -
Aed2g2702 253 Gene3D - 55 154 IPR012677 -
Aed2g2702 253 Gene3D - 155 253 IPR012677 -
Aed2g2702 253 SUPERFAMILY RNA-binding domain, RBD 171 248 IPR035979 GO:0003676
Aed2g2702 253 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 57 253 - -
Aed2g2702 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 243 IPR000504 GO:0003723
Aed2g2702 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Aed2g2702 253 SMART rrm1_1 174 246 IPR000504 GO:0003723
Aed2g2702 253 SMART rrm1_1 71 144 IPR000504 GO:0003723
Aed2g2702 253 CDD RRM_SF 175 246 - -
Aed2g2702 253 SUPERFAMILY RNA-binding domain, RBD 69 161 IPR035979 GO:0003676
Aed2g2702 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 250 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2702 Aed-Chr2 29012104 29014550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2702 72 253 Eukaryotic Initiation Factors Gene Family AT3G16380 27.869 6.39e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2702 - - gsj:114400287 391.349