Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2695 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTTGATCTTGACGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAGCAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAGGACTCAGCAGCTGAGGCTGGTGGGAAAGACCTATTGCCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGGGATGATGACCAAAAATCGTCCTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCTCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCCCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCCATGGGTGACATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCTATTGAGGAGATACATAACAAGGAATTCAAGGGAAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTTATTGGTAATGTTCCAAAAACTTGGACTGAAGATGATTTTAGGAAAATTGTTGAAGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTCATCAAGGTTAAAGCTCTATACGTCAAAAACATACCAGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGTGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAACTGCTTGAAGTTGTTCTTGCCAAGCCACAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCCGGACCTCATCCAAACCATCTTCCACATCCTGCGTATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGACTGGATATGGTGTTGCTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTTCTTCAACAACCTGGTGTACAAGTGCCACCTGCCCGCCCCCGCAGAATTGATAGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAATAGAAGGTATCGACCCTATTAA 1272 0.4324 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDLLPEAEKSDIATEFGDDDQKSSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKIVEGVGPGVENIELIKVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYVERSSALKAVKDTEKYEIDGQLLEVVLAKPQADKKPDGGYAYNPGPHPNHLPHPAYGNFSGNPYGSLGTGYGVAGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPARPRRIDRSNGPSGQPGRGGGGSGNDEGNRNRRYRPY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2695 423 SMART rrm2_1 107 180 IPR003954 GO:0003676
Aed2g2695 423 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 220 421 - -
Aed2g2695 423 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 220 - -
Aed2g2695 423 SUPERFAMILY RNA-binding domain, RBD 103 214 IPR035979 GO:0003676
Aed2g2695 423 MobiDBLite consensus disorder prediction 1 84 - -
Aed2g2695 423 PANTHER GEO13361P1-RELATED 220 421 - -
Aed2g2695 423 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Aed2g2695 423 Gene3D - 220 342 IPR012677 -
Aed2g2695 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Aed2g2695 423 CDD RRM_SF 108 180 - -
Aed2g2695 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 299 IPR000504 GO:0003723
Aed2g2695 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 292 IPR000504 GO:0003723
Aed2g2695 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Aed2g2695 423 Gene3D - 8 187 IPR012677 -
Aed2g2695 423 SMART rrm1_1 223 295 IPR000504 GO:0003723
Aed2g2695 423 SMART rrm1_1 107 180 IPR000504 GO:0003723
Aed2g2695 423 MobiDBLite consensus disorder prediction 49 84 - -
Aed2g2695 423 MobiDBLite consensus disorder prediction 381 423 - -
Aed2g2695 423 MobiDBLite consensus disorder prediction 8 48 - -
Aed2g2695 423 PANTHER GEO13361P1-RELATED 2 220 - -
Aed2g2695 423 SUPERFAMILY RNA-binding domain, RBD 221 316 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2695 Aed-Chr2 28973395 28979743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2695 103 353 Eukaryotic Initiation Factors Gene Family AT1G71770 28.030 5.39e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2695 K13161 - gmx:100790907 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2695 2 28973395 28979743 Aed2g2695 2 28973395 28979743 ECH