Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g2663 | ATGAGTGAGAGAATGGAATCAAGTAGCATTGAGAACAACACTGTGTCATCGATCTCTATGATGGAAGAGGATGATCATCCGCATCAGTTTTCTTCAATCTCAAAGCTGCATAACAATGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGGCACACACTTTGTTCAACTTGCAAGACAAGGGTACACAACCGATGCCCAACTTGCAGGCAGGAACTCGGCGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTAAGACCATACAACTGCCCTTATGCCGGGTCAGATTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGAGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGATATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCAGTTTACATGGCGTTCCTCCGATTCATGGGCGATGAAAGAGAGGCACGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATTCCCAACCTGTGTAGCTAG | 945 | 0.4593 | MSERMESSSIENNTVSSISMMEEDDHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNLRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g2663 | 314 | CDD | RING-HC_SIAHs | 50 | 88 | - | - | |
Aed2g2663 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 160 | IPR013083 | - | |
Aed2g2663 | 314 | SUPERFAMILY | RING/U-box | 39 | 91 | - | - | |
Aed2g2663 | 314 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 3 | 306 | - | - | |
Aed2g2663 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 52 | 88 | IPR001841 | - | |
Aed2g2663 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 104 | IPR013083 | - | |
Aed2g2663 | 314 | Pfam | Seven in absentia protein family | 94 | 293 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Aed2g2663 | 314 | SUPERFAMILY | TRAF domain-like | 105 | 297 | - | - | |
Aed2g2663 | 314 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 293 | IPR008974 | GO:0005515 | |
Aed2g2663 | 314 | CDD | Sina | 166 | 294 | - | - | |
Aed2g2663 | 314 | ProSiteProfiles | Zinc finger SIAH-type profile. | 105 | 165 | IPR013010 | GO:0008270 | |
Aed2g2663 | 314 | PANTHER | UBIQUITIN LIGASE SINAT3 | 3 | 306 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g2663 | Aed-Chr2 | 28791136 | 28796537 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g2663 | 1 | 300 | C3H Transcription Factor Family | AT2G41980 | 70.530 | 1.17e-160 | 448 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g2663 | K04506 | - | gmx:100792687 | 662.144 |