Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2659 ATGGACATGATCTTGAAGGTCCTCTTTCACTTGTTGATGATTTTACTTGTTACATATGGATCAGAATCAGATGACTGCAAATATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTCCCCTTTGAAATAGAAGGGCAGCAGCAACATCCTCATTGCGGCTATCCTGGTTTCAAATTAACTTGTACCAATGACAGCAAAACAGTTATTAAACTTCCATACACGGGAAAGTTCTATGTCCGAAACATTAACTACCTCAGACAACAGATACAAGTCTATGACCCTCATAATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCTGCTTCTCCCTTCATTGCCACTTCGCTCCGCAACTACACCTTCTTAAGGTGCCAAACTCGGAACCAGAACGTAGCAGGGTCACAATTCATTCCCATTGAATGTCTTAGCAATTCTACATCTTTCGTGTCAGCTATTCCTTCAGTGAACTTCACCGATCCATTGCCCAAGTCTTGCCACGTTATTAAGAACCTCTCATTTTCAGTTGCTAGGCCGGGACGATACGAGGAAACTTTCAGAGATGACCTTAGTGGAGATCTTCGACTAACGTGGTATAAACCAGACTGTAGATATTGCGAATCACAAGAAGCCATGTGCGGATTTCAGAGCATAAGCAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACGGTTCCTTCACAACATGGACTTCGAGTATTTGGAATCATCACATTATCCATTGTGGGACCAGCTATAATCGTTGCCATTGCGATGGCATGCTATGCGTCTTTAAAGTACAGAAGAGGAAGAGGCAATACAGCGAGGTCGGAACTGACAGCAATATCACCCCAACCCCCTTCCATGAGTATGGGGGGGTTGGATGAGTCTACAATCGAGTCTTATCAGAAAGTGATACTAGGTGAAAGTCGACGAGTACCAGGACCCAATGACGGGTGTTGCACCATATGCTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAATGTGCACATTGCTTCCATGCCGAATGCATAGATGAATGGCTTCGCATGAACGGTACATGCCCCCTTTGCCGAAACTCCCCCTCCCCTCCTTCTACTGTTCAAGTTCAAGTTCAACTTATGTCCACTCACCCTTGA 1158 0.4396 MDMILKVLFHLLMILLVTYGSESDDCKYYSWCSDNNILIRFPFEIEGQQQHPHCGYPGFKLTCTNDSKTVIKLPYTGKFYVRNINYLRQQIQVYDPHNCLPKRLLSLNLSASPFIATSLRNYTFLRCQTRNQNVAGSQFIPIECLSNSTSFVSAIPSVNFTDPLPKSCHVIKNLSFSVARPGRYEETFRDDLSGDLRLTWYKPDCRYCESQEAMCGFQSISSDQVRCFFDYQTVPSQHGLRVFGIITLSIVGPAIIVAIAMACYASLKYRRGRGNTARSELTAISPQPPSMSMGGLDESTIESYQKVILGESRRVPGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLRMNGTCPLCRNSPSPPSTVQVQVQLMSTHP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2659 385 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Aed2g2659 385 Pfam Wall-associated receptor kinase C-terminal 168 229 IPR032872 -
Aed2g2659 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 370 IPR013083 -
Aed2g2659 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 375 - -
Aed2g2659 385 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 375 - -
Aed2g2659 385 ProSiteProfiles Zinc finger RING-type profile. 323 365 IPR001841 -
Aed2g2659 385 SUPERFAMILY RING/U-box 316 370 - -
Aed2g2659 385 Pfam Ring finger domain 323 365 IPR001841 -
Aed2g2659 385 CDD RING-H2_PA-TM-RING 322 365 - -
Aed2g2659 385 SMART ring_2 323 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2659 Aed-Chr2 28774292 28775880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2659 20 370 C3H Transcription Factor Family AT2G25410 42.297 2.93e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2659 - - gmx:100799895 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2659 2 28774292 28775880 Aed2g0550 2 3986089 3990153 PCT