Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2641 ATGGAGAAAGTTGTCACTTACAAACATGTCAAACCTGGCATTTTAAATAATGCATCACCAAAGGTAGTTCGGATTTCAATGGTGGATCCCGATGCCACAGATGACGAAGATGAAGATGAAGGGTTTCCTAGAACGGTTGTGAATGAGATCAGAATTGTGGAGAAGGTGTCACTGAAACAGCATTTCAAGGGAAAAAAAACTGAAGAGCGTCTTGGAAAGAAGCTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCTGCTGAAATCAGAGATCCTGTGAAGCGAACAAGGGTGTGGTTAGGGACTTATGACACGGCTGAAGAAGCTGCTATGGCTTATGACAAAGCCGCTATTGCCATTAGAGGCTCCAACGCTCTCACTAATCTCATCAAGCCTTCTACAGGGCAAGAAGACATGGACGACGATGATGACACTGATGAATCTGAAGCTAGTGTGAGTGATTTGGTTGAGAATGTAAGTGGTGGTGGGAATGATTCAAGTAAAGAGTTGTCTCATTTGCCTTCACCCACTTCTTTTTGGTCCCCTATTAGATTTAAACATTTATTAGCATGGGCTTATTTTGATGTTCTTATCTTGGAAACAAGAAGTTCAAGTTTGAAGGGTTGGTGGGATATTTTTGCTTTGGCCATTTACATGCATTAG 666 0.4249 MEKVVTYKHVKPGILNNASPKVVRISMVDPDATDDEDEDEGFPRTVVNEIRIVEKVSLKQHFKGKKTEERLGKKLRGVRQRPWGRWAAEIRDPVKRTRVWLGTYDTAEEAAMAYDKAAIAIRGSNALTNLIKPSTGQEDMDDDDDTDESEASVSDLVENVSGGGNDSSKELSHLPSPTSFWSPIRFKHLLAWAYFDVLILETRSSSLKGWWDIFALAIYMH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2641 221 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 179 - -
Aed2g2641 221 SUPERFAMILY DNA-binding domain 74 130 IPR016177 GO:0003677
Aed2g2641 221 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 CDD AP2 73 129 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Aed2g2641 221 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Aed2g2641 221 MobiDBLite consensus disorder prediction 131 174 - -
Aed2g2641 221 MobiDBLite consensus disorder prediction 138 152 - -
Aed2g2641 221 MobiDBLite consensus disorder prediction 153 174 - -
Aed2g2641 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 5 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2641 Aed-Chr2 28634046 28635090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2641 19 199 AP2-EREBP Transcription Factor Family AT4G27950 40.000 5.75e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed2g2641 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2641 - - ccaj:109796536 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2641 2 28634046 28635090 Aed2g2641 2 28634046 28635090 ECH