Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g2621 | ATGTCTGAAGTGAACGCCACCCCTGAAACCCCTCAAAACAAAACAATCTACATCAACAACCTCAACGAGAAGATTAAGATTGATGAGTTGAAGAAGTCTTTGAACGCTGTTTTCACTCAGTTCGGGAAGATACTCGAGGTGTTAGCTTTTAAAACCCTAAAGCACAAAGGTCAAGCTTGGGTGGTCTTTGAAGATGTCTCTTCTGCTTCCAATGCCCTGAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAATCTGATGTAATAGCAAAAGCAGATGGTACTTTCGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATGCAGCTTATGCTGGTGCTTATGGTGCAACACCTGCTATACCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCCCCAAATAATATTCTCTTTATTCAGGGTCTTCCCAACGACTCAACTCCCATGATGCTCCAAATGCTCTTTCTCCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGGATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCTATGCAGGCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACGTATGCCAAGAAATAG | 726 | 0.4339 | MSEVNATPETPQNKTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNAAYAGAYGATPAIPYPGGAKSMVPEAPAPPNNILFIQGLPNDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g2621 | 241 | CDD | RRM1_U1A_like | 15 | 92 | - | - | |
Aed2g2621 | 241 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 169 | 228 | IPR000504 | GO:0003723 | |
Aed2g2621 | 241 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 16 | 86 | IPR000504 | GO:0003723 | |
Aed2g2621 | 241 | CDD | RRM2_U1A_like | 165 | 237 | - | - | |
Aed2g2621 | 241 | Gene3D | - | 7 | 113 | IPR012677 | - | |
Aed2g2621 | 241 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 14 | 93 | IPR000504 | GO:0003723 | |
Aed2g2621 | 241 | SMART | rrm1_1 | 15 | 89 | IPR000504 | GO:0003723 | |
Aed2g2621 | 241 | SMART | rrm1_1 | 168 | 237 | IPR000504 | GO:0003723 | |
Aed2g2621 | 241 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | 6 | 241 | - | - | |
Aed2g2621 | 241 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 6 | 241 | - | - | |
Aed2g2621 | 241 | MobiDBLite | consensus disorder prediction | 106 | 126 | - | - | |
Aed2g2621 | 241 | Gene3D | - | 155 | 241 | IPR012677 | - | |
Aed2g2621 | 241 | SUPERFAMILY | RNA-binding domain, RBD | 11 | 230 | IPR035979 | GO:0003676 | |
Aed2g2621 | 241 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 167 | 241 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g2621 | Aed-Chr2 | 28523057 | 28526079 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g2621 | 3 | 96 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 30.208 | 5.14e-06 | 45.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g2621 | K11091 | - | gmx:100777062 | 415.231 |