Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2620 ATGGCGAGGAGGGAGGAGCGAGTGAGAGGAGTGTCGGCATCGGAATTGAAGGAGAAGTTGTGCGAATTGGTGAAGGCAATCGTGGAGTCCGACGACTACACGGTGCAAGCCGCCGACGAAGCCATCGCCACCCTTTCGGCTCTCAAACATTTCAACTCGCCTAATTCTTTCGACGACTTCCCTCTTCCTCCCGAATTTCGCTGCCCCATTTCAACCCAATTGATGACCGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTAACAGAACATGTCCTCAGACACAGCAGGTTCTGTCTCACTCAGTTTTAACTCCGAATTACTTGGTCCGAGACATGATTCTGCAGTGGTGCAACGAGCGTGGAATTGACCTACCCATGCCTGTTAAGGACATTGATGAAGCCGTGACCAATGCCGACAGAAAGCATTTGAATTCCTTGCTTCACAAGTTGCAATTGTCTCTTTCTGATCAGAAACAAGCTGCCAAGGAGCTCAGGCTTTTGACTAAACGAATGCCTTCTATTCGAACTCTTGTTGGGGAATCCACTGATGTCATTCCCCAGTTGCTCAGTCCGTTGTCGTCGCCCGGCGCAGCTTCCACGGACCCTGATCTCCATGAGGACTTGGTCACCACGGTTTTGAATCTCTCAATCCATGATGATAATAAGAAGGCATTTGCAGAGGATCCTGCAGTGATTTCTTTGCTCATTGATGCCTTGAAATCTGGAACTATTCAAACAAGGAGCAACGCCGCGGCTGCTATTTTCACGCTGTCCGCTATTGATTCCAACAAGCACATCATTGGAAAATCCGGGGCCATTCAACATTTGCTTCAGCTTTTGGATGAGGGGCAGACATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTTTGTCTTGTGCATGAGAATAAAGGGAGGACCGTGCGAGATGGTGCGGTTCAGGTTATTCTGAACAAGATGATGGATCGCATACTAGTTGATGAGTTGTTGGCTATATTGGCACTCCTCTCCAGCCATCCTAGGGCTGTTGAAGAAATGGGGGATTTAGGTGCTGTTCCTTTGTTGTTGGGGGTTATTAGGGAGAGCACATCTGAGAGGAGCAAGGAAAATTGTGTTGCAATCCTATACACTATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAGGAAAAGGCCAATGGTACACTGTCAAAGCTTTCACAGTGTGGAACTTCAAGGGCAAAAAGGAAGGCTAACGGTATTCTTGAGAGGCTCAATAGATCCCTCTCCTTAACTCACACTGCTTAG 1335 0.4734 MARREERVRGVSASELKEKLCELVKAIVESDDYTVQAADEAIATLSALKHFNSPNSFDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHSVLTPNYLVRDMILQWCNERGIDLPMPVKDIDEAVTNADRKHLNSLLHKLQLSLSDQKQAAKELRLLTKRMPSIRTLVGESTDVIPQLLSPLSSPGAASTDPDLHEDLVTTVLNLSIHDDNKKAFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSAIDSNKHIIGKSGAIQHLLQLLDEGQTLAMKDAASAIFNLCLVHENKGRTVRDGAVQVILNKMMDRILVDELLAILALLSSHPRAVEEMGDLGAVPLLLGVIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLSKLSQCGTSRAKRKANGILERLNRSLSLTHTA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2620 444 Gene3D - 339 439 IPR011989 -
Aed2g2620 444 SMART arm_5 182 229 IPR000225 GO:0005515
Aed2g2620 444 SMART arm_5 230 271 IPR000225 GO:0005515
Aed2g2620 444 SMART arm_5 352 393 IPR000225 GO:0005515
Aed2g2620 444 SMART arm_5 272 312 IPR000225 GO:0005515
Aed2g2620 444 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Aed2g2620 444 SUPERFAMILY RING/U-box 51 135 - -
Aed2g2620 444 Gene3D - 192 338 IPR011989 -
Aed2g2620 444 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Aed2g2620 444 Pfam U-box domain 63 132 IPR003613 GO:0004842|GO:0016567
Aed2g2620 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 9 442 - -
Aed2g2620 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Aed2g2620 444 SUPERFAMILY ARM repeat 165 434 IPR016024 -
Aed2g2620 444 CDD RING-Ubox_PUB 66 108 IPR045210 -
Aed2g2620 444 PANTHER U BOX DOMAIN-CONTAINING 9 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2620 Aed-Chr2 28516319 28518519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2620 124 444 U-box Gene Family AT3G07360 58.232 4.78e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2620 - - gmx:100806619 727.628