Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2610 ATGTTCAAGCTCTCTCGCGTGCTCCCTCTTACTTCCACTTCCAGGCATAGGCTGTTGGAAGTGCTGTCGTCTACGAAAGTTGGAGTTGGATATGCTTCGGATCGAATATTCGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGATTCCTTGTCTTCCAACTTTCACTAAGTTGGATGTAAGATTGTGGTTTTCTTTTAACAAATTTATTCAATTTGTTCGTGTTCTATTAACTAAACGTCATTCTTGTCAGTCTGGGTCTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTGTTGGGGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACCATAGGCGCTCAAGATTCCTGTGATTTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATTCAAATGGCTACTTTGTGTCTTTGACTGTCGTCAACAACCTGTTAAACACCAACGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCACTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCATAGTTAGCCTTCAACCAAAGGGTGTCTCTAAAGTTTCAGACTTGGAATGGGAAAAATGA 723 0.4177 MFKLSRVLPLTSTSRHRLLEVLSSTKVGVGYASDRIFAPYTVYKGKAAFSLIPCLPTFTKLDVRLWFSFNKFIQFVRVLLTKRHSCQSGSVVVDRRGSIMMTFMHSVGERKYDWEKRQRFALSATEVGSLITIGAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHSNGYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTACTFALPHIMGWDQITNQQSRGIVSLQPKGVSKVSDLEWEK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2610 240 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 218 IPR009044 GO:0003677|GO:0006355
Aed2g2610 240 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 62 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed2g2610 240 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 79 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed2g2610 240 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 62 - -
Aed2g2610 240 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 79 240 - -
Aed2g2610 240 SUPERFAMILY ssDNA-binding transcriptional regulator domain 33 66 IPR009044 GO:0003677|GO:0006355
Aed2g2610 240 Pfam Whirly transcription factor 77 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed2g2610 240 Gene3D Transcriptional Coactivator Pc4; Chain A 28 221 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2610 Aed-Chr2 28424253 28427593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2610 33 240 Whirly Transcription Factor Family AT1G71260 55.349 9.70e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aed2g2610 Whirly 4.3e-44 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2610 - - gmx:100817863 370.548