Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2585 ATGCAAAGTAAAGATGTTATATTGGCATGCAACCATAATGCCACAGTTGATAATGGAAATCTTACGATTGCTAGTTCTTCACGTGTGGGAGAAGTAAAAATATATTTGAATTGTGACTCTGCATTGAAACAACCAAATTTCTGTATTCCTAATTTGGATCTTGTTATGAAGTTCATGGACAAGAAGTACCTTGGCTCATGCAACACTCTTGGGCCTCAAATTTCTATGGCAAAGCTATTAGATGAACTTTGCAGGGCTTATCACAAGTTGGGATATCGGAAGGGATCAAATTCCAAGCATGCCAATTCACAATATGTTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAAATGAAATTGGCAGTAGTGATGACTTGCCAAAGTTTAATTACATACCATGTAATATAATTTATCAAAGTGCTGTTGTAAATATTTCTTTGGCTCGGATTTCGGATGAGGGTTGTTGTTCTGATTGTTCTGGTGACTGTCTCTCTTCATCATTGCCTTGTGCATGTGCTCAGGAAACTGGCGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGATGAATTTCTAACAGCTTGTGTGTCTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGCCCTTTAGAGAAGTCCAAGAATGAGGACACGCTTGAACGATGCAAGGGGCATATGGTGTTCTTAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAGCGCTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCAATATGGAGTTATACGACAGGATTATGCAGGATAGTCGCAATAAGAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCTCTATGTTTAGATGGAACAAACAATGGAAATGTTGGAAGGTTTATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCTGTTGAAATAGAGAATCCTGATCACCATTATTATCATCTTGCCTTCTTCACCAACAGGAAAGTGAGTGCATATGAGGAGTTGACATGGAATATGATGATTCAACTTGTAGGGAAAGGAAAAATAGAAAATCAGGTTGATGTAACAAGAATTGGAGTAGAGTGA 1176 0.3793 MQSKDVILACNHNATVDNGNLTIASSSRVGEVKIYLNCDSALKQPNFCIPNLDLVMKFMDKKYLGSCNTLGPQISMAKLLDELCRAYHKLGYRKGSNSKHANSQYVHFISDITKGSEKVKISLINEIGSSDDLPKFNYIPCNIIYQSAVVNISLARISDEGCCSDCSGDCLSSSLPCACAQETGGEFAYTPQGLLKDEFLTACVSMKNEPQDHHYVYCQECPLEKSKNEDTLERCKGHMVFLTREGKGWGLRALEDLPKGTFVCEYVGEILTNMELYDRIMQDSRNKRHTYPVTLDADWGSEKGLKDEEALCLDGTNNGNVGRFINHRCYDANLIDIPVEIENPDHHYYHLAFFTNRKVSAYEELTWNMMIQLVGKGKIENQVDVTRIGVE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2585 391 Gene3D SET domain 89 372 IPR046341 -
Aed2g2585 391 ProSiteProfiles SET domain profile. 230 370 IPR001214 GO:0005515
Aed2g2585 391 Pfam SET domain 248 368 IPR001214 GO:0005515
Aed2g2585 391 SUPERFAMILY SET domain 103 368 IPR046341 -
Aed2g2585 391 Pfam Pre-SET motif 112 204 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed2g2585 391 SMART set_7 236 376 IPR001214 GO:0005515
Aed2g2585 391 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 12 240 - -
Aed2g2585 391 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 240 373 - -
Aed2g2585 391 CDD SET_SETDB-like 134 368 - -
Aed2g2585 391 SMART preset_2 109 222 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2585 Aed-Chr2 28251668 28254516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2585 108 371 Su(var)3-9 homologs AT5G04940 28.214 5.45e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed2g2585 SET 6.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2585 - - gmx:100802372 609.757