Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2580 ATGATTCCTTGTCTCCATCTGCAGGGGACTCCAGTAAATATTATTGTGGATTCTCATGTCTGGGTTGAAGATCCACAAGAATGTTGGATTGATGGACAGGTATCAAAAATCAATGGAAAGGATGCTGAAATTGTAACAACCGATGGAAAAAAGGTTGTCGCAAAGTTATCAAAATTATATCCCAAAGATATGGAAGCTCCTGCGGGTGGAGTGGATGATATGACTAAGCTTTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTAAAAACTAGATATGAATTGCATGAAATATATACTTATACCGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGGTTTGCACATGATGGAACAATACAAGGGAGCACCACTTGGAGAGTTGAACCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTCGCGACGGGAATAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTTGCTTTCTTAGGAGGTAGGGCTGTCACTGAAGGACGAACCGTTGAACAACAAGTTCTTGAATTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGGAAATCCTAAAACGTTTCATTACCTTAACCAGTCAAAATGCTATGAACTGAATGATATAAATGATTCCCGTGAGTATATTGCCACCAGGAGAGCTATGGATATTGTCGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGGAATATTGATTTTGCTAAAGGAAGGGAAATTGATTCATCAACTCCAAAAGATGACAAAGCCAAATTCCACTTAAAAACAACTGCTGAGCTTCTTATGTGTGACCCTGGTGCCTTGCAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTTGATCCCAATAGTGCAGCAATCAGCAGAGATGGCTTAGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATCGGACAAGACTCCAATTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTACATCTAACAGCACGTGTTTAAGATGGAACAAGAAGAATACAAGAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGCATGTTTCCAAAGTCCACACATGAAACCTTTTCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAAATTTCACTATTTCTCATTATGCTGGCGAGGTGCAGTACCAGTCTGACCATTTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCAGGCCTCTTTCCTCCACTTCCAGAAGACACGTCCAAGTCTTCAAAATTTTCTTCAATTGGTTCTCGATTTAAGCTGCAACTGCAGCAATTAATGGAAATACTAAGCTCCACAGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAGTTTTTGAGAATGCCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAAGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTATAAACCGATTTTCCCTTCTTGCTCCAGATATCACAGAAGTACAACATGATGAGAGGACTGTTTGCCAAAGGATTCTGGAAAAGGCAAAGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAGGTACTCAGTAATGCAGCAAAAACTATCCAACGGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCACTACGGAAGAAGACTATATATGTGCAGTCTCTGTGGAGAGGAAGACTTGCATTCAAACTTTATCAGCACAAGAGAAAGGAGGTGGCTGCTGTGAAAATTCAGAAGAACATGCGCAAATATGAAGCTAGGAAAACCTATATTAAACTCCAAGCATCAGTAGTTACTTTGCAAACAGCTTTAAGGACAATTGCTTCCCTCAAGGAGTTCAGATTTAGGAAACGGACTAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACCAAGCTGCTTCATATCATAAGAAGCTCAAGAAAGGTTCAATTGTCACACAATGCCGATGGAGGGGGCGCATGGGCAGGATGGCACTTAAAAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGATGCAAAGGACAAGCTTGAAAAAAGACTGGAGGAAATCACTTGGCGTCTTCAACTAGAGAAAAGTTTAAGGAGCAACGCAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGAAGAACTCACTGAAGGAGATGCAGAACAAAGTTGATGAAACCAGTGCATTGCTTATAACGGAGAGAGAGAATGCAAAGAAAGCTATTGAAGAAGCACCTCCTGTTATTAAAGAAACTCAAGTTATTGTTGAAGACACACAGAAGATTGAATCACTAACAGAGGAAGTTGAGAGTCTAAAGGCATCCCTTGAGTCAGAGAAACAGAAAGCTGATGAGAAATATAATGAAGCCCAAGCTTCTAATGAAGAAAGGGGGAAAAAATTAGAAGACATGGAGAAGAAGTTTCGTCAGCTCCAAGAATCCTTGACCAGAATCAAGTTCTACGTCAACAAGCCCTGTCCATGGCACCTAATAAGTTCAACTCAGGACGCTCTAGATCAATTATTCAGAACGGACAGTACACAACATCTTGGAGTGGAAGCAAAGACAACTTTGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATGCAACACCTCTACACTTGTCTTGTTTCTCCAGCGCACACTAAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGACGTCGTTCTTCTTCATCGTCAGGGGCCCTGTTTGGGAGGATGACACATAGTTTCCGTGGAACTCCAGCAGGAGTTCATCTTTCCCTAATCAATGGTAGCATGAGCGGTGGTGCAGATGGGTCGTCAAGGCAAGTTGAAGCCAAGTACCCTGCTCTGCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATTTACGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCGCCCAGAACATCCAGAGCCAGCTTGGTTAAGGGATCATCACGTTCAGCTGCAAACACTGAAGCCCAGAAAGTTTTGATTGCTCACTGGCAGGAGATAGTTAAGAGCCTAGAGAACTTCTTAAATACTTTGAAAGCAGATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATATTTTCCTTCATCAATGTCCAACTTTTCAATAGTCTTCTCCTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAATCTGGTTTGGCTGAATTGGAGGATTGGTGTTGTAAGGCCACTGATGAGGTCATACATCAGAAACCAAAGAAAACGCTGAATGAAATAACTCATGATTTGTGCCCAGTCCTCAGCATACAACAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTATCCCCGGATGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCGAAGGAACCGATAGATATCTCTGATATAGAGGCCCCACCAAAAATACGTGCAAACACTGGCTTTAGTTTCTTGCTGCCACAACCAGCATGA 3978 0.4108 MIPCLHLQGTPVNIIVDSHVWVEDPQECWIDGQVSKINGKDAEIVTTDGKKVVAKLSKLYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELHEIYTYTGNILIAINPFQRLPHIYGLHMMEQYKGAPLGELNPHVFAVADVAYRAMIRDGNSNSILVSGESGAGKTETTKMLMRYLAFLGGRAVTEGRTVEQQVLEFWKHLAMLKLSGITIPGNPKTFHYLNQSKCYELNDINDSREYIATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFAKGREIDSSTPKDDKAKFHLKTTAELLMCDPGALQDALCKRVMITPEEVIKRSLDPNSAAISRDGLAKTIYSRLFDWLVNKINNSIGQDSNSKSLIGVLDIYGFESFTSNSTCLRWNKKNTRRSRSIGATLNLLTTKMFWTLLKSMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTNFTISHYAGEVQYQSDHFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEDTSKSSKFSSIGSRFKLQLQQLMEILSSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPDITEVQHDERTVCQRILEKAKLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKTIQRRIRTHQARKHYLALRKKTIYVQSLWRGRLAFKLYQHKRKEVAAVKIQKNMRKYEARKTYIKLQASVVTLQTALRTIASLKEFRFRKRTKASIIIQARWRCHQAASYHKKLKKGSIVTQCRWRGRMGRMALKKLKMAARETGALKDAKDKLEKRLEEITWRLQLEKSLRSNAEESKAQEIAKLKNSLKEMQNKVDETSALLITERENAKKAIEEAPPVIKETQVIVEDTQKIESLTEEVESLKASLESEKQKADEKYNEAQASNEERGKKLEDMEKKFRQLQESLTRIKFYVNKPCPWHLISSTQDALDQLFRTDSTQHLGVEAKTTLTQDNNDVLAYWLCNTSTLVLFLQRTLKASGAAGMAPQRRRSSSSSGALFGRMTHSFRGTPAGVHLSLINGSMSGGADGSSRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSAANTEAQKVLIAHWQEIVKSLENFLNTLKADHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKSGLAELEDWCCKATDEVIHQKPKKTLNEITHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSKEPIDISDIEAPPKIRANTGFSFLLPQPA 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2580 1325 Gene3D Kinesin motor domain 35 203 IPR036961 -
Aed2g2580 1325 Pfam Myosin head (motor domain) 71 200 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 Pfam Myosin head (motor domain) 218 388 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 Pfam Myosin head (motor domain) 421 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 PANTHER MYOSIN 217 388 - -
Aed2g2580 1325 PANTHER MYOSIN 12 200 - -
Aed2g2580 1325 PANTHER MYOSIN 422 943 - -
Aed2g2580 1325 Pfam DIL domain 1163 1247 IPR002710 -
Aed2g2580 1325 Gene3D - 204 253 - -
Aed2g2580 1325 Pfam IQ calmodulin-binding motif 648 666 IPR000048 GO:0005515
Aed2g2580 1325 Pfam IQ calmodulin-binding motif 743 761 IPR000048 GO:0005515
Aed2g2580 1325 ProSiteProfiles IQ motif profile. 669 698 IPR000048 GO:0005515
Aed2g2580 1325 ProSiteProfiles IQ motif profile. 694 723 IPR000048 GO:0005515
Aed2g2580 1325 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 PANTHER MYOSIN-9 982 1322 - -
Aed2g2580 1325 MobiDBLite consensus disorder prediction 900 922 - -
Aed2g2580 1325 PANTHER MYOSIN 982 1322 - -
Aed2g2580 1325 Gene3D - 421 534 - -
Aed2g2580 1325 SMART iq_5 645 667 IPR000048 GO:0005515
Aed2g2580 1325 SMART iq_5 693 715 IPR000048 GO:0005515
Aed2g2580 1325 SMART iq_5 764 786 IPR000048 GO:0005515
Aed2g2580 1325 SMART iq_5 741 763 IPR000048 GO:0005515
Aed2g2580 1325 SMART iq_5 668 690 IPR000048 GO:0005515
Aed2g2580 1325 Gene3D - 578 644 - -
Aed2g2580 1325 Gene3D Myosin VI head, motor domain, U50 subdomain 255 390 - -
Aed2g2580 1325 ProSiteProfiles IQ motif profile. 646 673 IPR000048 GO:0005515
Aed2g2580 1325 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 ProSiteProfiles Dilute domain profile. 980 1302 IPR002710 -
Aed2g2580 1325 PANTHER MYOSIN-9 217 388 - -
Aed2g2580 1325 PANTHER MYOSIN-9 12 200 - -
Aed2g2580 1325 PANTHER MYOSIN-9 422 943 - -
Aed2g2580 1325 Coils Coil 827 861 - -
Aed2g2580 1325 SMART DIL_2 1162 1250 IPR002710 -
Aed2g2580 1325 Pfam Myosin N-terminal SH3-like domain 18 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 SMART MYSc_2a 64 644 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 Gene3D - 744 793 - -
Aed2g2580 1325 Gene3D - 696 743 - -
Aed2g2580 1325 Gene3D - 645 695 - -
Aed2g2580 1325 ProSiteProfiles Myosin motor domain profile. 69 643 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed2g2580 1325 Coils Coil 879 938 - -
Aed2g2580 1325 Gene3D Myosin VI head, motor domain, U50 subdomain 479 512 - -
Aed2g2580 1325 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Aed2g2580 1325 Gene3D Kinesin motor domain 535 573 IPR036961 -
Aed2g2580 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 794 IPR027417 -
Aed2g2580 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 696 IPR027417 -
Aed2g2580 1325 Coils Coil 788 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2580 Aed-Chr2 28224297 28235258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2580 9 982 Myosins gene family AT1G54560 61.616 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2580 K10357 - nnu:104610077 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2580 2 28224297 28235258 Aed2g2580 2 28224297 28235258 ECH
Aed2g2580 2 28224297 28235258 Aed8g1857 8 23238010 23251880 PCT