Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2566 ATGACAAGTGGTGTTATGGAGGCAGAGCGAGACAAGTACAAGATGATCAACTTTGAAGAAACCGAGTTGCGACTCGGGCTGGGGCTGCCACTCATCAGTAGTGGAAACGAGGTCGGCGAGCCCACCACGCTCAAAAACATCACTTGCACTACTGGGAAGAGGGGGTTTTCGGATACATCCACTTCTACCATGGATTTGAAGCTTAACCTTTCCTCAATTAACGTCGACGTCGCTAAAGACAAAAACATCTCTTCTGCTGCTGCACCTCCTCCTGCTCGCGCTAACGACCCAGCAAAGCCACCCGCAAAGGCACAAGTGGTGGGGTGGCCACCAGTGAGGTCATTCAGAAAGAACATTGTTAACAACGTTCAAAAGAGCAACAACAAGGAGGGAGAAAAAGGAGGTACAATTGGAGCAGCTGCATTCGTGAAGGTGAGCATGGATGGTGCTCCCTATTTACGCAAGGTGGATTTGAAACTGTACAAGAGCTACCAAGACCTCTCTGATGCACTGGCTAAAATGTTCAGTTCATTCACCGTTGACAACTACTGTGGATCCCAAGGCAATATGAAAGACTTCATGAACATGAACATGAACGAGAGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTACGAAGACAAAGATGGTGATTGGATGCTCGTGGGCGACGTACCATGGGAAATGTTCGTGGAATCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAGGCAATTGGGCTAGCACCAAGAGCAGTGGAGAAGTGCAAGAACAGAAGCTAG 795 0.483 MTSGVMEAERDKYKMINFEETELRLGLGLPLISSGNEVGEPTTLKNITCTTGKRGFSDTSTSTMDLKLNLSSINVDVAKDKNISSAAAPPPARANDPAKPPAKAQVVGWPPVRSFRKNIVNNVQKSNNKEGEKGGTIGAAAFVKVSMDGAPYLRKVDLKLYKSYQDLSDALAKMFSSFTVDNYCGSQGNMKDFMNMNMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2566 264 Pfam AUX/IAA family 45 255 IPR033389 -
Aed2g2566 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 257 IPR003311 GO:0005634|GO:0006355
Aed2g2566 264 PANTHER AUXIN-INDUCED PROTEIN AUX28 13 257 - -
Aed2g2566 264 Gene3D - 137 258 - -
Aed2g2566 264 MobiDBLite consensus disorder prediction 85 106 - -
Aed2g2566 264 ProSiteProfiles PB1 domain profile. 140 246 IPR000270 GO:0005515
Aed2g2566 264 SUPERFAMILY CAD & PB1 domains 136 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2566 Aed-Chr2 28140937 28143963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2566 143 249 B3 DNA Binding Superfamily AT3G61830 31.776 2.88e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed2g2566 AUX_IAA 2.9e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2566 K14484 - gmx:100796888 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0872 8 7474331 7478578 Aed2g2566 2 28140937 28143963 ECH
Aed2g2566 2 28140937 28143963 Aed2g2566 2 28140937 28143963 ECH