Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2554 ATGTGCGAGTCACAGAGACAAATGGAGAGCTCACAACAAGAATTCTTCAAAGTTTTCCTGCACCACAAAGGTTCTACCCAGTTGCAAATGTCAATTGGGTATATATTGCTGACGGTGTCACTCACCGGGGACTTGTTCTTGTTTCAGCAAATACCAACATCTTTCAACAAGTTCTTCAATGGAGTGATGCCATGCAAGGTCACTCTTGTAGACCACGATAGAAAATCTTGTGATGTTTTCTTGGAGAAAATCGAGGGTCGCTTGGTTTTTAAAGATGGGTGGCAGCAATTTGCCAGGGAGAAAGATTTAAAAGATGGGGACTTCTTGGTTTTTCAGTATGATGGCACGTCTACGTTTAATGTGAAGATATTTTCAAAAACTGGGTGCAGGAAAGTGGCTGCACCTGCAACTAGTGAAAAAATTCTTCCCTCTGTGATTTTGGATGAAGATTCTGATCAGCGTTGTGATAAAAAAATCCAGTACGCTCGTAAACGGAAACAGTCACGGCCGCTACCAAGTGTCAAAATAAAAAAGGAATCAGGGTTAGAAGTTCCATGTCCATCCGAAGGAGCTCGGCGCAAATCAAAAAGAGTTTATGAAGAAGAAGAAGAAGAAAAGGATGACCACAATGAGAAGAAACCTGATCCATTGGAGAATCCTCATTATTTTGAGATATATTTTAATGCTGCCTGGAGACTGAAAAAAGTGGAACTTCCTAGAAGTGTGCTGAAGAAAATGAATATAAAGCTGATATCGAAGATAGGCCTAAGAGATGAGAATGGCAAATTATGGCCGGCGTCGATCACTTCCACAAAGAATGATCCTCCTCGTTATTTTCTTGGAGGTGGATGGTATGATTTCCAACGGAATTACAATATTCAAGAAGGGCACCGATGTGATTTTGAGTTTGTTGTTGATAAAGCAAACGTAGCCCAAGAACTGCTTGTGCGCGTACATTCCAAATCGACATGCTCATTGCTTTAG 984 0.4106 MCESQRQMESSQQEFFKVFLHHKGSTQLQMSIGYILLTVSLTGDLFLFQQIPTSFNKFFNGVMPCKVTLVDHDRKSCDVFLEKIEGRLVFKDGWQQFAREKDLKDGDFLVFQYDGTSTFNVKIFSKTGCRKVAAPATSEKILPSVILDEDSDQRCDKKIQYARKRKQSRPLPSVKIKKESGLEVPCPSEGARRKSKRVYEEEEEEKDDHNEKKPDPLENPHYFEIYFNAAWRLKKVELPRSVLKKMNIKLISKIGLRDENGKLWPASITSTKNDPPRYFLGGGWYDFQRNYNIQEGHRCDFEFVVDKANVAQELLVRVHSKSTCSLL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2554 327 Gene3D - 6 129 IPR015300 -
Aed2g2554 327 Gene3D - 215 324 IPR015300 -
Aed2g2554 327 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 1 309 - -
Aed2g2554 327 PANTHER B3 DOMAIN-CONTAINING 1 309 - -
Aed2g2554 327 MobiDBLite consensus disorder prediction 180 216 - -
Aed2g2554 327 Pfam B3 DNA binding domain 234 320 IPR003340 GO:0003677
Aed2g2554 327 Pfam B3 DNA binding domain 51 126 IPR003340 GO:0003677
Aed2g2554 327 Coils Coil 192 212 - -
Aed2g2554 327 CDD B3_DNA 232 304 IPR003340 GO:0003677
Aed2g2554 327 SUPERFAMILY DNA-binding pseudobarrel domain 218 319 IPR015300 -
Aed2g2554 327 MobiDBLite consensus disorder prediction 189 216 - -
Aed2g2554 327 SMART B3_2 223 322 IPR003340 GO:0003677
Aed2g2554 327 SMART B3_2 36 127 IPR003340 GO:0003677
Aed2g2554 327 ProSiteProfiles B3 DNA-binding domain profile. 34 127 IPR003340 GO:0003677
Aed2g2554 327 ProSiteProfiles B3 DNA-binding domain profile. 221 322 IPR003340 GO:0003677
Aed2g2554 327 CDD B3_DNA 51 125 IPR003340 GO:0003677
Aed2g2554 327 SUPERFAMILY DNA-binding pseudobarrel domain 38 129 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2554 Aed-Chr2 28071228 28072655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2554 10 320 B3 DNA Binding Superfamily AT5G66980 29.851 2.01e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed2g2554 B3 2.4e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2554 - - gmx:102669908 426.787