Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2550 ATGTTCGATGGAGCACCTGCACCAGACCAGTTCCACCAATTCATAGCAGCAAGGACCACTCTTCCTCTCCACTTGTCTTTCCCTCTCCACCAAGCCTCTTCAACTCCTCCTCCAGCCCCAAATACCTTCTTACCCTTTGATCCATATCATCATCACTTGCCACTCCAAACCAATCATCATCATCTCTTGCACCCTCCCACCCACAAACATGAACAAGATCACAAGGTTTCTCCAAATCCAATCAACAACGTCGACGTCCAGATTCAAAGACAATTATCAGATCATCAACTAACCGATTCCACCAGCTGGACCAACGATGAAGTGCTTGCACTTTTGAAAATAAGATCTAGCATGGAAAATTGGTTCCCAGACCTCACTTGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGATAAGTTCGAAGATGAGAGTAGATACTTCGACAACATTAATAACTACGGCGCCAAGAACAATTTCCGGTTTCTCAGCGAGCTTGAGGAGCTTTGTCAAAACCCTGATCCTGGTGCTGATGTAGTGATTAGGAGTGATGACATTGCTGTGGTGGAAAAGTCAAAGGTGCGCAAGAGGAAGAGGCGTCATAGGTTCGAGCTGTTCAAGGGTTTTTGCGAGGGTGTTATCAACAAGATGATGGCTCAGCAAGAAGAGATTCACAACAAGCTCCTCGAGGACATGGTCAAAAGAGACCAAGAGAAGTTCGCCAGAGAAGAAGCGTGGAAGAAGCAAGAGTTGGATCGGATGAACAAGGAGCTTGAGATTATGGCACAAGAGCAAGCTGTTGCCGGGGATAGACACGCCACCATAATTGAATTCTTGAAGAAATGTGCAACAACAACAACTTCATTAATATCCCCTCCAAGCCAATATGCCAAAAAACTTCCAAATTGTGAATTGCACTCGAAAAACCCTAATAATCCTTCCAATGAAGACAACAACAATCTTGAGCCAACACCCAATTCTCCTAAAATGATTCAGAATCATGATGATCAAACTACGTTGGGAGCAGAAAACCCTAGCAGTACAAGTGACACGTTAACATTGCAAGTACCTTCTACCCCAACACTCCACAACCCTAGTTCTTCTTCACTCAACAGCCATAATAACAATATTATTATTATCCCATTAGAGTCAAATTCAGTTTCAACATATAAGCCCAGCAGTGAGAACTCGAAAGATGACATTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTGAGGTGCACAAGTCTAAGTAACAACAAAAACAATGAAGAGAAAGAAGGAAACAAGGGTCCACTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACCTGTCCTTATTTCCATCAATTGAGTTGCTTGTATGGTCAGGGAAAAATTGTGGCACAGTCCACTGAAAGGGAAGGGAACTATACTTGA 1566 0.4361 MFDGAPAPDQFHQFIAARTTLPLHLSFPLHQASSTPPPAPNTFLPFDPYHHHLPLQTNHHHLLHPPTHKHEQDHKVSPNPINNVDVQIQRQLSDHQLTDSTSWTNDEVLALLKIRSSMENWFPDLTWDHVSRKLAELGFKKSAEKCKDKFEDESRYFDNINNYGAKNNFRFLSELEELCQNPDPGADVVIRSDDIAVVEKSKVRKRKRRHRFELFKGFCEGVINKMMAQQEEIHNKLLEDMVKRDQEKFAREEAWKKQELDRMNKELEIMAQEQAVAGDRHATIIEFLKKCATTTTSLISPPSQYAKKLPNCELHSKNPNNPSNEDNNNLEPTPNSPKMIQNHDDQTTLGAENPSSTSDTLTLQVPSTPTLHNPSSSSLNSHNNNIIIIPLESNSVSTYKPSSENSKDDIGRRWPRDEVLALINLRCTSLSNNKNNEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAQSTEREGNYT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2550 521 MobiDBLite consensus disorder prediction 314 382 - -
Aed2g2550 521 SMART sant 99 156 IPR001005 -
Aed2g2550 521 SMART sant 410 476 IPR001005 -
Aed2g2550 521 ProSiteProfiles Myb-like domain profile. 413 474 IPR001005 -
Aed2g2550 521 PANTHER - 193 515 - -
Aed2g2550 521 PANTHER - 15 183 - -
Aed2g2550 521 MobiDBLite consensus disorder prediction 309 382 - -
Aed2g2550 521 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 193 515 - -
Aed2g2550 521 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 15 183 - -
Aed2g2550 521 Gene3D - 414 479 - -
Aed2g2550 521 Gene3D - 103 159 - -
Aed2g2550 521 CDD GT1 412 481 - -
Aed2g2550 521 Pfam Myb/SANT-like DNA-binding domain 101 178 IPR044822 -
Aed2g2550 521 Pfam Myb/SANT-like DNA-binding domain 412 500 IPR044822 -
Aed2g2550 521 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2550 Aed-Chr2 28052149 28055349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2550 212 506 Trihelix Transcription Factor Family AT5G28300 47.896 1.70e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed2g2550 Myb_DNA-bind_4 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2550 - - gmx:100801868 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2550 2 28052149 28055349 Aed2g2550 2 28052149 28055349 ECH
Aed2g2550 2 28052149 28055349 Aed8g1832 8 23047706 23050651 PCT