Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2492 ATGGCACTAGAAGCAGTAGTGTATCCCCAAGCACAGGACCCGTTTGGAATGAAAGAGCACCCCTACATCTACAACAACTTGTTAGAAGGTGGTGGAGGTAACTGGGGCTATGCTGCTGCTGCAGACTTGTTCAACCTTGAAAAAGAAGACCAAACTTGTGTCACTTCTTTTCTTGAGAGCCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTCCACCATCCATTTTGCCTCACTTGAATGCATCAAATCCTCAATCTTCAGAGACTAGTAACATAGATAGTTCTGTTTCCACCCCTGCTACTGCTCGTCCCAAAAGACGCAGAACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGCGCAACAGAAGGAAGCAAATGAACGACTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCCTACGTTCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTTAAGGAGCTTGAACAGAGGTTGCAATCTCTTGGTGGTCAGAAAGAGAAAGAGGAAGAGGGGAAATCTGATGTGCCATTTTCTGAGTTCTTCACCTTTCCACAGTACTCAACAAGAAGTGGGAGTGAGAATTCAACAGGCATGAGCATGAGTGAGCAAAAGGGTGAGGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGCCCAAAGCAGCTTCTCAAAATAGTCTCTAGTTTGCATGGCCTGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAATTTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCCGCAGCAGTATACCAAATGCTGGATACGATTCAACAAGATTCAATCTTGAATTAA 948 0.4378 MALEAVVYPQAQDPFGMKEHPYIYNNLLEGGGGNWGYAAAADLFNLEKEDQTCVTSFLESQTENYPYGEWNCSPPPSILPHLNASNPQSSETSNIDSSVSTPATARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNDYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQSLGGQKEKEEEGKSDVPFSEFFTFPQYSTRSGSENSTGMSMSEQKGEADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGLRLTILHLNVTTTGEFVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDTIQQDSILN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2492 315 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Aed2g2492 315 MobiDBLite consensus disorder prediction 78 120 - -
Aed2g2492 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Aed2g2492 315 MobiDBLite consensus disorder prediction 78 105 - -
Aed2g2492 315 PANTHER MAX DIMERIZATION, MAD 1 315 - -
Aed2g2492 315 Gene3D - 108 190 IPR036638 GO:0046983
Aed2g2492 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Aed2g2492 315 CDD bHLH_AtFAMA_like 126 199 - -
Aed2g2492 315 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 315 - -
Aed2g2492 315 Coils Coil 171 191 - -
Aed2g2492 315 SMART finulus 129 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2492 Aed-Chr2 27659098 27660903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2492 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.256 1.94e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g2492 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2492 - - gmx:100782243 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2492 2 27659098 27660903 Aed8g1784 8 22695742 22697657 PCT