Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2486 ATGGATCATCAAGGGCATAACCAGAACCCATCTATGGGGGTGGTTGGTAGTGGAGCTCAATTAGCATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCAGTTGTGACATCAGTTGGGACCATTCAATCCACTGGTCAACCTGCTGGAGCTCAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCACCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGGATGATATCAGCTGAGGCACCAGTCATCTTTGCAAGGGCATGTGAGATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACTCTTCAAAAAAACGATATTGCTGCTGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCCCTTCCATACTGCTACATGCCACCTCAGCATGCGGCCCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCTAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCACAGCCACCAGACCAACGACAGTCATCCCCAGAACATTAG 783 0.4713 MDHQGHNQNPSMGVVGSGAQLAYGSNPYQQGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAAQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPEH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2486 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Aed2g2486 260 MobiDBLite consensus disorder prediction 1 20 - -
Aed2g2486 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Aed2g2486 260 MobiDBLite consensus disorder prediction 1 15 - -
Aed2g2486 260 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
Aed2g2486 260 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Aed2g2486 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2486 Aed-Chr2 27615518 27618230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2486 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 3.72e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed2g2486 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2486 K08066 - gmx:100527803 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2486 2 27615518 27618230 Aed8g1777 8 22622688 22623479 PCT