Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2465 ATGTCAAACTCAAACATCACAAGCTGTGATAGTTGGAGCTTCTCTACAGAGAATACTACTGGAGGAGAAGATGCAGTAGCTGTTAAACAGCAATTGGAGATGCTTGGCCAGCTCCATAGTCCAAATTCAAACACTTCAACCACAACTAATAACAGCAATAGCAATGATTCACAACCACCTGCCAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAGTGCTGAAGTCATAGCTCTCTCGCCAAACACCCTAGTGACCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGTCGAGGCCATAACCTGCCGTGGAAGCTGAAACTGAGAAGCACAACTGAAGTTAGAAAACGGGTTTATGTTTGTCCTGAAGCCTCGTGTGTGCACCACAACCCAGCTCGAGCACTGGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCGAAAATATGTGGAACTAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCATCACCCACAGAGCTTTTTGTGATGCACTGAGTGAGGAAAACAACAAGTTCAACGAAGGACAATTGGCAACGATGCATGGTTCTTCAAACTTGCAGCCACCAATAATCCCAAACCTAGTTGCATCATCATTACCAATTAACATTACCAATAATAATCAGAAGCATGCGCACCCACTATCACTCCCTCACGACCTCATTACAACAATTCCTGCCAAACCCTTTAACAACAACAACATGGGTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTTCTCCCTCTCAACTAAGCTCAAACTCACCAAACATTATGTTCGAGCTGGAAAATGGTCTCCATTCACCTCATATGTCCGCCACAGCATTGCTCCAAAAAGCTGCACAATTTGGCGCAACAGTGAATACTAACAACAACAACATGATGAGTGAAGAAAAAAGCTTTGTGACAAGCATGGCACCACCATCCTATGGGATCATGATGAACCCCAACATGCATAATGGTCAACAAGTAGACTTGTCTCAATATAATTTCAATGCCAATGGGATGATGGATGCAGGTGGTAGCAATGGCATGGGAATGAGTGGTTTGGACATGTTTAATGTTATATTGGATCAAAGTAAGGCATTGTCGAAGATCATAGAGCAGAACAATCGAAGCAACAGCAGTACTACTACTTATAATGGTGTTAATTTGCATGCAATGAATATTGGTGGAACTAAAGGGACTTCTGGTGAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGATGGCAATTTCTATGGTGATGGTGATCAACACTCAGAAATGGCTGCTAGAGATGGATCAATATGGAGAAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACCATATGA 1512 0.4286 MSNSNITSCDSWSFSTENTTGGEDAVAVKQQLEMLGQLHSPNSNTSTTTNNSNSNDSQPPAKKKRNLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRSTTEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENNKFNEGQLATMHGSSNLQPPIIPNLVASSLPINITNNNQKHAHPLSLPHDLITTIPAKPFNNNNMGAAFTRSLSSTSSPSQLSSNSPNIMFELENGLHSPHMSATALLQKAAQFGATVNTNNNNMMSEEKSFVTSMAPPSYGIMMNPNMHNGQQVDLSQYNFNANGMMDAGGSNGMGMSGLDMFNVILDQSKALSKIIEQNNRSNSSTTTYNGVNLHAMNIGGTKGTSGEDVMTLDLLGIGGGGDGNFYGDGDQHSEMAARDGSIWRNAGLESFSATNSTI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2465 503 SMART c2h2final6 167 187 IPR013087 -
Aed2g2465 503 SMART c2h2final6 132 162 IPR013087 -
Aed2g2465 503 SMART c2h2final6 91 113 IPR013087 -
Aed2g2465 503 MobiDBLite consensus disorder prediction 1 25 - -
Aed2g2465 503 Gene3D Classic Zinc Finger 145 225 - -
Aed2g2465 503 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Aed2g2465 503 MobiDBLite consensus disorder prediction 35 61 - -
Aed2g2465 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Aed2g2465 503 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 31 469 - -
Aed2g2465 503 MobiDBLite consensus disorder prediction 1 75 - -
Aed2g2465 503 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Aed2g2465 503 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Aed2g2465 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2465 Aed-Chr2 27475737 27479918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2465 61 338 IDZ Gene Family AT3G50700 56.329 1.13e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g2465 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2465 - - gmx:100776872 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2465 2 27475737 27479918 Aed2g2465 2 27475737 27479918 ECH
Aed2g2465 2 27475737 27479918 Aed8g0853 8 7237574 7241033 PCT