Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2401 ATGGAAGCTGCAGTTTACAGGTTGAAACCTGTTTTGCCTAGTTATCTCCAGCGAGAAGCTCCTCATCAACACAATAATGTAACCGACTCAGACTCAGATATGTCGGATCGGATGATCAAGATCCAGATCTCAAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATACAATGTCAAAAGGTTGGAGCACCGCCAGAAGTGGCTTGCCTTCTTGAAGAAGTAGGCCGAGAAAGTGAGCGCATGAATGGTCGCAGTGAGATAGGGCAGGGTCCTGAACTTGACCAGTTTATGGAAACATTCTGCCAAGTTCTTAAACGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTTAGCAACCTTTGTAATGGATCAACACTAATAACTAACAACCGCTCCGATGAGGTAGCTAGTGGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAATATAATAATAATATGGTATCTTCTTTAACTTGCCCAGGTGATCAAAACGTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCACTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTTCCAAGGGATGCAAGGATAGCACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATGACTGGACTGGATCAAAAGCAGATAAACAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACCTGCGATTTGCCGTCATGGACGGCGGCATAGGAGGACCCATGTTGTTTTAG 858 0.4406 MEAAVYRLKPVLPSYLQREAPHQHNNVTDSDSDMSDRMIKIQISNHPLYPDLLSAYIQCQKVGAPPEVACLLEEVGRESERMNGRSEIGQGPELDQFMETFCQVLKRYKEELSRPFNEATLFLGDMESQLSNLCNGSTLITNNRSDEVASGGASEEELSCGEMEAFEYNNNMVSSLTCPGDQNVKEMLLRKYSGHFSGLRKEFLKRRKKGKLPRDARIALMDWWNTHHRWPYPTEEEKVKLSEMTGLDQKQINNWFINQRKRHWKPTEDLRFAVMDGGIGGPMLF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2401 285 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 277 - -
Aed2g2401 285 ProSitePatterns 'Homeobox' domain signature. 241 264 IPR017970 GO:0000981|GO:0006355
Aed2g2401 285 SUPERFAMILY Homeodomain-like 205 278 IPR009057 -
Aed2g2401 285 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 24 277 - -
Aed2g2401 285 CDD homeodomain 206 266 IPR001356 GO:0003677
Aed2g2401 285 SMART KNOX1_2 37 81 IPR005540 GO:0003677|GO:0005634
Aed2g2401 285 Pfam KNOX2 domain 88 134 IPR005541 GO:0003677|GO:0005634
Aed2g2401 285 ProSiteProfiles ELK domain profile. 183 203 IPR005539 GO:0003677
Aed2g2401 285 ProSiteProfiles 'Homeobox' domain profile. 203 266 IPR001356 GO:0003677
Aed2g2401 285 Pfam ELK domain 185 204 IPR005539 GO:0003677
Aed2g2401 285 Pfam Homeobox KN domain 223 262 IPR008422 GO:0003677|GO:0006355
Aed2g2401 285 SMART ELK_2 183 204 IPR005539 GO:0003677
Aed2g2401 285 SMART KNOX2_2 84 135 IPR005541 GO:0003677|GO:0005634
Aed2g2401 285 SMART HOX_1 205 270 IPR001356 GO:0003677
Aed2g2401 285 Pfam KNOX1 domain 39 80 IPR005540 GO:0003677|GO:0005634
Aed2g2401 285 Gene3D - 201 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2401 Aed-Chr2 27094975 27099880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2401 8 281 Homeobox Transcription Factor Family AT1G23380 50.714 6.40e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed2g2401 KNOX2 3.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2401 - - gmx:100803095 471.855