Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2363 ATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCGGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGCTGGAGCTCCGTTCCAAAACTAGCTGGTCTTCAGAGGTGTGGCAAAAGCTGCAGATTAAGGTGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCTCAGCAAGAAGAGAAATCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCGTGTCTGAAGAAGAAGCTTAGGCAAAGAGGTATTGACCCAAACACACACCAGCCCCTCTCTGAGGTTGAGAATGAGAAGGACAAGGCTCTTATGACAGCTGAGCAGCAGAAAGCCTCGAATAATGAGGTGAGTCTTGTTGAGCCACCAAAAGCAAAGGCAATAGCCAATACCCTAGAGAGGTTTGAGAGTTCCATCGTGCCTAGTTCTGATATGATGGGGGGAATGGGATATTTCCCTTTCCAGCAGCAGCTGAACTATGGACCAAACATGGGACCCCCACTTTGCTTCATGCCAACAACAAGTTCTTCTCAAATGATGTCTGCAGAGCTGAATTCTAGCATGCTCCATTCTATGTTCCCAACACATGTAAAGCCAACAGTTAGCCTCCAGTCTAACAACAACCCTTCTTCGGCTATATCCTCTGATGGGGTTCATCAGAACTGGGAAGCAGTCAGCAATAACAATAACAATAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCAGCACAAACTTCCTTGATCATAGCAGCACAATAACATGGGTCGGGACCAAGCCAGATGCTTATGCTGTTGTACCTAATTTGCAATCAGAACAAGAAGACATCAAATGGTCTGAATATCTAAACAGCACCCCTTTCTTTCTTGGAGCCGCCACAACAGTGCATCATCAAACAGCAAATTCTCTCTACAGTGATGAGGCCGTGAAGCCAGAATCATCAGGGTTCATAACAGACGAATCAAGTAACAGTTGGCACCACAGCCACCAGCATTTTCAACCTTCGGATATATATACCAAAGATCTTCAAAGATTTTCACTGGCTTTTGGACAAACCCTCTAG 1170 0.4504 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEKSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENEKDKALMTAEQQKASNNEVSLVEPPKAKAIANTLERFESSIVPSSDMMGGMGYFPFQQQLNYGPNMGPPLCFMPTTSSSQMMSAELNSSMLHSMFPTHVKPTVSLQSNNNPSSAISSDGVHQNWEAVSNNNNNNNASKSNGSSSSTNFLDHSSTITWVGTKPDAYAVVPNLQSEQEDIKWSEYLNSTPFFLGAATTVHHQTANSLYSDEAVKPESSGFITDESSNSWHHSHQHFQPSDIYTKDLQRFSLAFGQTL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2363 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed2g2363 389 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aed2g2363 389 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed2g2363 389 MobiDBLite consensus disorder prediction 258 279 - -
Aed2g2363 389 CDD SANT 17 61 IPR001005 -
Aed2g2363 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed2g2363 389 Gene3D - 11 67 - -
Aed2g2363 389 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed2g2363 389 Gene3D - 68 150 - -
Aed2g2363 389 PANTHER MYB DOMAIN PROTEIN 55 1 382 - -
Aed2g2363 389 SMART sant 66 114 IPR001005 -
Aed2g2363 389 SMART sant 13 63 IPR001005 -
Aed2g2363 389 PANTHER HOMEODOMAIN-RELATED 1 382 - -
Aed2g2363 389 CDD SANT 69 109 IPR001005 -
Aed2g2363 389 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed2g2363 389 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed2g2363 389 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2363 Aed-Chr2 26870251 26872201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2363 1 389 MYB Transcription Factor Family AT1G09540 50.623 3.03e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed2g2363 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2363 K09422 - gmx:100788976 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2363 2 26870251 26872201 Aed2g2342 2 26700014 26702028 ECH
Aed2g2363 2 26870251 26872201 Aed8g1597 8 21130192 21132276 ECH
Aed2g2363 2 26870251 26872201 Aed2g2363 2 26870251 26872201 ECH
Aed2g2363 2 26870251 26872201 Aed8g1597 8 21130192 21132276 PCT