Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2354 ATGGCTTCTATCATAGGCGTTTCCTCCATTTACCAAACGCCACCTCTCGAACTATACCAGAGGCCAAACACTAGTTCTTCTTCTTCCACTTCCACTTCCTCCTCCGTTAGGTTGCAATGTTTAGACTCTAAGTCTCACTTCAACAACGTCCTCCGAGCCCACCGCCACGTCACTGGCCCGGGCCTCAAGCCCACTCTGACTTTCGTCCCCTCCGCCGTCGCCACTCCCAACTCCTCCCTCCTTAGCGAAGAAGCCTTCAAAGGACTTGGCCGCGACTTCGACGAATTCGGCGGCCACGCCTCCGACTCCGACTCCGCCGAATCCTTTAACCCCGACGAACTCGACATTTCCAAGCTCGACCTGCCCTCGCGCCTCGTCGATTCTCTCCGGAGCCGTGGGATTACCAACCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACCGGAAAGACATTAGCGTTCGGAATTCCAATTATTAAAGGCCTCACTGAAGATGAAGATGCACCTTCTCACAGGAGGTCTGGTAGGCTTCCGAGATTTTTGGTGCTTGCGCCTACGAGAGAGTTGGCTAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTACCTCAACACTGTTTGTGTTTATGGTGGTGTTTCTTATGTTACTCAGCAGAGTGCACTTACGCGCGGTGTTGATGTGGTGGTTGGAACACCGGGGAGAATAATTGACTTGATAAATGGGAACAGCCTGAAGCTCAGTGAGGTTCAGTATTTGGTTCTCGATGAAGCAGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAATGATTCTGGAGAATCTTCCATCTCAGAGGCAGAGCATGCTTTTCTCTGCTACCATGCCTGGTTGGGTCAAGAAGTTGTCCAGAAAATATTTGAACAATCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGTCAATTCTTTCTGATCTTGTAACTGTTTACGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAACTATTATAACGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGTCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACCTTCGTACACCGCTCTGGTCGTACTGGACGTGCAGGAAAACAAGGTAATGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGAGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCACCAGCGATGGAAGAGGTTTTGCAGTCATCTGCTGAGCAGGTTGTTGCCACACTTAATGGAGTTCATCCTGAGTCTGTTCAGTTTTTCACCCCAACTGCACAGAAACTGATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACAACTAAGTGGATTCTCCCGACCTCCATCATCCCGGTCTCTTATCACCCATGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCTTCAGACACTAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATTCATTTAATTGCAGATGAAAGGGTTCAGGGAGCTGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTAAATAGGGACATACCACCTGGAAACACTGTTTCCAAGATCACTAAGCTACCTGCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGACAGAGATCAAAGTAGCCGAAGAGGTTCTACTTCTAGGGGAGGTTTTAGTTCTAGGGGAGGTTCCGCTTCCAGGGATCGGAGAGGAGGTGGTTTTAAATCCTCACGGGGATGGAATGGGGATGACTCTGATGATGATGACTTTGGTGATCGATCTAGTAGGAGAGGTGGTAGAAGTTTTAAAACTGGCGGCAACACCTGGTCTCGAGCAGCAGGTAAAAGCAGTGGGGATGATTGGCTAATTGGAGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTTAATTGCGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAACTCTTCAACAAACAGGCGAAGCTTTTTTTAA 2343 0.4708 MASIIGVSSIYQTPPLELYQRPNTSSSSSTSTSSSVRLQCLDSKSHFNNVLRAHRHVTGPGLKPTLTFVPSAVATPNSSLLSEEAFKGLGRDFDEFGGHASDSDSAESFNPDELDISKLDLPSRLVDSLRSRGITNLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEDAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPSQRQSMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRSILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTTIITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLQSSAEQVVATLNGVHPESVQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSSDTRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTVSKITKLPALQDDGPPSDFYGRFSDRDQSSRRGSTSRGGFSSRGGSASRDRRGGGFKSSRGWNGDDSDDDDFGDRSSRRGGRSFKTGGNTWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGACFNCGESGHRASDCPNSSTNRRSFF 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2354 780 Gene3D - 728 779 - -
Aed2g2354 780 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aed2g2354 780 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Aed2g2354 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 496 IPR001650 -
Aed2g2354 780 SUPERFAMILY Retrovirus zinc finger-like domains 739 776 IPR036875 GO:0003676|GO:0008270
Aed2g2354 780 MobiDBLite consensus disorder prediction 765 780 - -
Aed2g2354 780 Gene3D - 339 538 IPR027417 -
Aed2g2354 780 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 41 768 - -
Aed2g2354 780 SMART ultradead3 133 339 IPR014001 -
Aed2g2354 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 322 IPR014001 -
Aed2g2354 780 CDD DEADc 125 323 - -
Aed2g2354 780 Gene3D - 115 326 IPR027417 -
Aed2g2354 780 CDD SF2_C_DEAD 336 465 - -
Aed2g2354 780 SMART helicmild6 376 456 IPR001650 -
Aed2g2354 780 MobiDBLite consensus disorder prediction 714 728 - -
Aed2g2354 780 MobiDBLite consensus disorder prediction 694 713 - -
Aed2g2354 780 PANTHER - 41 768 - -
Aed2g2354 780 MobiDBLite consensus disorder prediction 626 780 - -
Aed2g2354 780 Pfam Zinc knuckle 755 771 IPR001878 GO:0003676|GO:0008270
Aed2g2354 780 ProSiteProfiles Zinc finger CCHC-type profile. 756 771 IPR001878 GO:0003676|GO:0008270
Aed2g2354 780 SMART c2hcfinal6 755 771 IPR001878 GO:0003676|GO:0008270
Aed2g2354 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 477 IPR027417 -
Aed2g2354 780 Pfam DEAD/DEAH box helicase 138 311 IPR011545 GO:0003676|GO:0005524
Aed2g2354 780 CDD GUCT_Hera 550 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2354 Aed-Chr2 26793924 26799397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2354 70 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.749 5.34e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2354 - - gmx:100779706 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2354 2 26793924 26799397 Aed8g1588 8 21043337 21048278 PCT