Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2342 ATGGGAAGGCACTCTTGCTGTTACAAACAGAAACTTAGGAAGGGTCTTTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATCACTAAGTATGGTCATGGATGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCAGAGATGGTCTCAAATTGCAGCACAATTGCCAGGGAGGACAGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGAATAGACCCAGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGAGAGGAGGACAAAACAAGGAGCCAAGAGTTATCCAATGAATTGAACCTCCTGAATTCAGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGCAGAGATCATCAATTGCCCCAAAAGCCTATGAGATGGAAGGTTCTTGTAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATGTCCAATTGTCCCAACAAAGACATGTTCCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGGAATTACCCTCTTCAGATCACTGACACTCTCCCAACCAATTCAAACTCTTGCCATTGGTTCGGCCCAACTGCAACTTCAACTGCAAGGCCCTTTGATATGAACTCTGAGTTTACTACAATTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACAACCTCATTTCTCCCTAGTACTTCTTTTTGCTACAAGCCATCATCACTTGGTGTCCCTTCAGAAGATATTTCAATTTCAACAGCCTCTTTTGGTTTGAATGGTCCCAATTACTGGGAAGCCAATGCCTCCAACAACAATAACAGCAATGGAAGCAACACAAGTGATGGCAGCAAGAACAGTGTGCTCTCTTCTTGTTGGGGATTGACAGAAGAAGCAAAGTGGTCTGAGTATCTCCACAACCCAATGTTGATGCTGGCAGCTCCTGAATCATTTAGGCCAGCCTCACATTTGGTACCTGATAACACTTTAGGAGCAATATTGTCTGATTCCAAGAGTGGAGAACAACAATCCCAAACTTCTAGCATCTTTTCCAAGGACATCCAGAAGCTAACAGCAGCCTTTGGACATATATAG 1110 0.4378 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEDKTRSQELSNELNLLNSESFKSDEGSYEQQRSSIAPKAYEMEGSCSSKINTKNDTNLMSNCPNKDMFLDSYTTSCQPSDLMGNYPLQITDTLPTNSNSCHWFGPTATSTARPFDMNSEFTTITSNVMSILPPTTTTSFLPSTSFCYKPSSLGVPSEDISISTASFGLNGPNYWEANASNNNNSNGSNTSDGSKNSVLSSCWGLTEEAKWSEYLHNPMLMLAAPESFRPASHLVPDNTLGAILSDSKSGEQQSQTSSIFSKDIQKLTAAFGHI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2342 369 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
Aed2g2342 369 CDD SANT 17 69 IPR001005 -
Aed2g2342 369 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Aed2g2342 369 MobiDBLite consensus disorder prediction 82 110 - -
Aed2g2342 369 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Aed2g2342 369 SMART sant 13 74 IPR001005 -
Aed2g2342 369 MobiDBLite consensus disorder prediction 82 104 - -
Aed2g2342 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Aed2g2342 369 PANTHER MYB DOMAIN PROTEIN 55 1 48 - -
Aed2g2342 369 PANTHER MYB DOMAIN PROTEIN 55 48 318 - -
Aed2g2342 369 Gene3D - 11 78 - -
Aed2g2342 369 PANTHER HOMEODOMAIN-RELATED 1 48 - -
Aed2g2342 369 PANTHER HOMEODOMAIN-RELATED 48 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2342 Aed-Chr2 26700014 26702028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2342 1 115 MYB Transcription Factor Family AT4G01680 61.290 5.01e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed2g2342 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2342 K09422 - gmx:100037467 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2342 2 26700014 26702028 Aed8g1597 8 21130192 21132276 ECH
Aed8g1597 8 21130192 21132276 Aed2g2342 2 26700014 26702028 ECH
Aed2g2363 2 26870251 26872201 Aed2g2342 2 26700014 26702028 ECH
Aed2g2342 2 26700014 26702028 Aed2g2342 2 26700014 26702028 ECH
Aed2g2342 2 26700014 26702028 Aed8g1574 8 20961127 20963205 PCT