Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2337 ATGCTTGACTCCACCCGCTCCTCCTCCATTCATGGGAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGCACGAGGATCAGGTTCATCATCACGAATACAACATATTGATGAAGATGGCAGCATTACAAAGAGAACAAGCAGGTTAAACCCATTATCATACTCACTTCAAGATCACCACTTTCCACCTCAAACTCAAAGGGACTCTGACATGAACTCTTCACACCAAACCATTAATGCCCAAGATTCGTCTCAATCCTCCCAACAAACCAAGAATTATTCCAACAACCTCAATGAAGAATTTGCAAACTTGTTCAGACCAGTAGTAGTAGTAAAAGACTCCAATAACCCCGTTACCACAGGCAATATTAATTCTCATCACTTACAACAACAGTGCTCATTACCTTCGTCTCCGCTCAAGAAACCAAGAACGCCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCGACTACTTCTCAGCAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGATATTAAGAAATCATCAGCTAAAGAATCAGATGGATTTCAACAGCAAACATCATTAACTGTTGAGAGAAGCACAAAACCGGTTGATAATGATGAGCAGTACTCTCAAGCCGTTCTTGGAATTCACAGATCCCAAGGTCAACTACGTTGTGACCAAACCTCAACCACTGCCGAAGAAGCACTTCGAGCCAATAAGGCAAAAGCTTATAATAATAATACTAACACGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCCTCCAACGACCCAAACCTTAGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGATGGAGAGCCTGAAGATATGGTAAAGCAAGAAAGAGAGGGTAGCAGAGTCAAGAGAAGCAGGAACACTGAGGTTCATAACTTATCAGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAACAAGGTGGACAAAGCATCAATGCTAGACGACGCCATCGACTATCTGAAGACCCTAAAGCTTCAGCTACAGGTAATGTCAATGGGAAGTGGGTTATGGCCAGTAATGAATATGATGAATGGACCACATTTGGGTCAGCTAGGAATGGGATTCAGAGCAGCACAGGTCCCCATTCCAGACAACAGACTTCAAATGTTTGGTTTCCCAAACCAAATAGTAACCATGCCTCATGCTCATGCACCTTTCTTCCCTATCATTGCAAATTCTGCCACACAACCACACTTGCCTACGACCACCAACTTGGCACAACATTTGGCTAATTCTGCTGCTGCTGCTGCATCTCTACATGCAACAAAGCTAGCCCCAACTCAGGTTTCCTTTCAACACCTCGGCACTAGTCTTCCACTAGCTACCCCTTTCATTTTTCCACAAAAATAA 1476 0.4275 MLDSTRSSSIHGNDFLELVWENGEIVARGSGSSSRIQHIDEDGSITKRTSRLNPLSYSLQDHHFPPQTQRDSDMNSSHQTINAQDSSQSSQQTKNYSNNLNEEFANLFRPVVVVKDSNNPVTTGNINSHHLQQQCSLPSSPLKKPRTPKVNFSNFSIPAVFLKSTTSQQTKNHSSPARVEDIKKSSAKESDGFQQQTSLTVERSTKPVDNDEQYSQAVLGIHRSQGQLRCDQTSTTAEEALRANKAKAYNNNTNTCHEPLLASSSVCSLGASNDPNLSFRKHEDTDDSTYLSDNDDGEPEDMVKQEREGSRVKRSRNTEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQVMSMGSGLWPVMNMMNGPHLGQLGMGFRAAQVPIPDNRLQMFGFPNQIVTMPHAHAPFFPIIANSATQPHLPTTTNLAQHLANSAAAAASLHATKLAPTQVSFQHLGTSLPLATPFIFPQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2337 491 MobiDBLite consensus disorder prediction 29 95 - -
Aed2g2337 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 384 IPR036638 GO:0046983
Aed2g2337 491 MobiDBLite consensus disorder prediction 297 328 - -
Aed2g2337 491 PANTHER TRANSCRIPTION FACTOR PIF3 6 102 IPR044273 GO:0003700|GO:0006355
Aed2g2337 491 PANTHER TRANSCRIPTION FACTOR PIF3 113 487 IPR044273 GO:0003700|GO:0006355
Aed2g2337 491 MobiDBLite consensus disorder prediction 119 147 - -
Aed2g2337 491 Gene3D - 312 374 IPR036638 GO:0046983
Aed2g2337 491 MobiDBLite consensus disorder prediction 189 204 - -
Aed2g2337 491 MobiDBLite consensus disorder prediction 48 95 - -
Aed2g2337 491 SMART finulus 322 371 IPR011598 GO:0046983
Aed2g2337 491 CDD bHLH_AtPIF_like 316 378 - -
Aed2g2337 491 MobiDBLite consensus disorder prediction 277 328 - -
Aed2g2337 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Aed2g2337 491 Pfam Helix-loop-helix DNA-binding domain 320 365 IPR011598 GO:0046983
Aed2g2337 491 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 102 - -
Aed2g2337 491 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 113 487 - -
Aed2g2337 491 MobiDBLite consensus disorder prediction 165 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2337 Aed-Chr2 26658191 26660778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2337 150 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 40.239 3.12e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g2337 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2337 K12126 - gmx:100804665 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2337 2 26658191 26660778 Aed2g2337 2 26658191 26660778 ECH
Aed2g2337 2 26658191 26660778 Aed8g1572 8 20935154 20937035 PCT