Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2328 ATGTCAGATATGATGAGGCATGTGCATGATGAGAGAACAGCACCATCTGAGACCAGCACTAACGGGGAAAAGAGACAACAAAAAGAAACAGTTCCATATCACAGGCTGTTCTTATTTGCTGACAAAACTGACATCGTTTTGATGGTTGTTGGCACCATTGGGGCCATTGGAAATGGTCTTGGTTTGCCTCTCATGACATTTCTGTTCGGGGAACTCATTGATAGCTTTGGCAATAACCAATTTGGCTCCGAAGTTGTCAAACAAGTTTCCAAGGTCTGTCTAAAATTTGTATACTTAGGAATAGGCACTGGTGTAGCTGCTTTCCTCCAGGTAACTTGCTGGACGGCCACAGGGGAAAGACAGGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATACTAAGACAGGATATTGCTTTCTTTGACAAAGAAACTAACACTGGAGAAGTCATAGGGAGGATGTCTGGTGACACTGTTCTCATACAAGATGCCATGGGGGAGAAGGTTGGGAGATTTCTGCAGCTAGTAGCAACATTCTTTGGGGGCTTTGTGATAGCATTTATCAAAGGGTGGCTTCTAACTGTTGTCATGTTATCAGTTGTTCCACTTGTTGCTACTGCTGGGGCTGCCATGGCCTTTATCATAGGAATGATGGCAACCCGAGGTCAAAGCGCGTGCACGAAAGCTTCACATGTAGTTGAAGAGACAATAGGTTCAATAAGAACTGTTGCATCCTTTACGGGGGAAAAGCAAGCAGTGTCCAATTACAAGAAATTTCTTGCAGATGCTTATAAATCAGGAGTTCATGAAGGTTTTGTAGGTGGAATGGGTCTTGGCATGGTTATGTTAGTTATGTTCTGCGGTTATGCTTTGTCTGTATGGTTTGGTGCAAAGATGATAATTGAAAAAGGATATAGTGCAGGAGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAGTGCTTCCACATCTCTTGGCCAGACATCTCCTTCCATGAGTGCTTTTGCTGCAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCTTATGACCCAAATGGAAAAAAACTAGAGGATATTCATGGTGAAATCCATTTAAAGGATGTTTACTTCAGTTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATACCAAGTGGCACCACAGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCTACAGTAATCAGTTTAATTGAAAGATTCTATGATCCACAGGCAGGAGAAGTTCTAATTGATGGAACTAATGTGAAAGAGTTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAATATTGCATATGGAAAAGAGGGAGCAACAGTTGAAGAGATAAGAGCTGCATCAGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGATACAATGGTTGGTGAGCATGGAACTCAGCTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCGAGAATTCTACTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAAAGAATAGTACAAGAAGCTCTTGACAGGATCATGGTCAACAGAACTACTGTCATCGTCGCACATCGCCTGAGCACAGTGAGAAATGCTGATATGATCGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACGTAGAATTAACCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGTCTACAAGAAGGAAACAAAGAATCGGAAGAAACAAGAGACAATGAAAACAAGAGGGAACTTTCCTCAGAATCCTTTAGAAAGTTGAGTCAAAGGCGGTCACTTCAAAGATCAGGATCATCTCTGGGGAACAGTGGCCGCCACTCTTTTTCAGTTTCATTTGGTTTACCTACAGGAGTTAGCATCCCTGACCCTGAACTTGAATACTCACAGTCACAGCCTCAAGAAAAATCACCAGAAGTTCCACTCTGGCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGAGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTACCATATTTCCAATATTTGGCTTGTTGCTCTCCAGTGTTATCAAAACATTTTTTAAACCATTTCCTGAGATGGAAAAGGATTCCAAGTTTTGGGCACTCATGTTTGTGACTCTTGGATTTGGATCTTTACTGGTTATTCCAGCCCGAAGCTACTTTTTCTCTTTGGCTGGCAGTAAGTTAATCCGAAGAATCAGGCTCATTTGTTTCGAGAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGCACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCTTTAGGACTATTGGTTCAAAACATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAATTGGCTTTTATTCTTCTTGTCTTGGTCCCCCTCATTGGAATAAATAGTTATATTCAAATGAAATTCATGAAGGGATCCAATGCAGATGCAAAGACGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATACAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAGGAGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGCAACAAGGGATACGACAAGGCTTGATAAGTGGAACAGGATTTGGGGTTTCATTTTTCTTGCTCTTCAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTGGAAGCTGGCAAGGCATCATTCGCAGATGTTTTTATGGTTTTCTTTGCTTTAACTATGGCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAGAGCCAAGATTGCCACTGCTTCCATATTTAGAATAATTGATAGGAAATCGAAGATAGATCCAAGTGATGAGTCTGGTGACACACTGGATAGTGTAAAGGGAGAAATACAGATTCGTCATGTAAGCTTTAAGTATCCATCTAGGCCAGATATACAAATTTTTCGAGACTTAAGCTTGACTATCCATCCAGGCAAGAGTGTGGCCCTAGTTGGTGAAAGTGGGAGTGGGAAATCCACAGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCTGGTCAATTTACACTTGATGGGATAGAAATTCAGAATTTAAAACTCAAGTGGTTAAGGCAGCAGATGGGACTGGTAAGCCAAGAGCCAGTCTTGTTCAATGACACCATCCGTGCCAATATTGCATATGGAAAGGAAGAAGGCAATGCAACCGAAGCAGAAATCATAACAGCAGCAAAACTAGCCAATGCACATGGGTTTATTAGTGCCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTATCTGGTGGGCAAAAGCAAAGGGTGGCCATTGCGCGTGCTATAATAAAAAGTCCAAAGATATTGCTACTGGATGAGGCCACAAGTGCACTAGATGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGATAAAGTGATGGTGAGTAGGACCACTGTGGTTGTGGCTCATCGTTTATCTACAATTAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGAGTTATAGTTGAGAAAGGAAGGCATGAGAAACTCATTAACATCAAGGATGGATTTTATGCTTCCTTGGTCCAACTTCATACAAGTGCTGCTACAACAGCATGA 3819 0.4242 MSDMMRHVHDERTAPSETSTNGEKRQQKETVPYHRLFLFADKTDIVLMVVGTIGAIGNGLGLPLMTFLFGELIDSFGNNQFGSEVVKQVSKVCLKFVYLGIGTGVAAFLQVTCWTATGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLVATFFGGFVIAFIKGWLLTVVMLSVVPLVATAGAAMAFIIGMMATRGQSACTKASHVVEETIGSIRTVASFTGEKQAVSNYKKFLADAYKSGVHEGFVGGMGLGMVMLVMFCGYALSVWFGAKMIIEKGYSAGAVVNVFVAVLSASTSLGQTSPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKKLEDIHGEIHLKDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATVEEIRAASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHVELTKDPEGAYSQLIRLQEGNKESEETRDNENKRELSSESFRKLSQRRSLQRSGSSLGNSGRHSFSVSFGLPTGVSIPDPELEYSQSQPQEKSPEVPLWRLASLNKPEIPELLIGCVAAIANGTIFPIFGLLLSSVIKTFFKPFPEMEKDSKFWALMFVTLGFGSLLVIPARSYFFSLAGSKLIRRIRLICFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLAFILLVLVPLIGINSYIQMKFMKGSNADAKTMYEEASQVANDTVGSIRTVASFCAEEKVMELYRKKCEGPMQQGIRQGLISGTGFGVSFFLLFSVYATNFYAGARFVEAGKASFADVFMVFFALTMASVGISQSSSLAPDSNRAKIATASIFRIIDRKSKIDPSDESGDTLDSVKGEIQIRHVSFKYPSRPDIQIFRDLSLTIHPGKSVALVGESGSGKSTVIALLQRFYDPDSGQFTLDGIEIQNLKLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEEGNATEAEIITAAKLANAHGFISALQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVSRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHEKLINIKDGFYASLVQLHTSAATTA 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2328 1272 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 8 1267 - -
Aed2g2328 1272 Gene3D ABC transporter type 1, transmembrane domain 993 1268 IPR036640 GO:0005524|GO:0016021
Aed2g2328 1272 SUPERFAMILY ABC transporter transmembrane region 690 1009 IPR036640 GO:0005524|GO:0016021
Aed2g2328 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1263 IPR003439 GO:0005524
Aed2g2328 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1264 IPR027417 -
Aed2g2328 1272 PANTHER - 8 1267 - -
Aed2g2328 1272 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524
Aed2g2328 1272 MobiDBLite consensus disorder prediction 638 653 - -
Aed2g2328 1272 MobiDBLite consensus disorder prediction 1 28 - -
Aed2g2328 1272 MobiDBLite consensus disorder prediction 610 637 - -
Aed2g2328 1272 MobiDBLite consensus disorder prediction 608 653 - -
Aed2g2328 1272 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Aed2g2328 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g2328 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 609 IPR027417 -
Aed2g2328 1272 Gene3D ABC transporter type 1, transmembrane domain 683 992 IPR036640 GO:0005524|GO:0016021
Aed2g2328 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Aed2g2328 1272 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Aed2g2328 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 990 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g2328 1272 SUPERFAMILY ABC transporter transmembrane region 34 355 IPR036640 GO:0005524|GO:0016021
Aed2g2328 1272 Coils Coil 605 625 - -
Aed2g2328 1272 CDD ABC_MTABC3_MDL1_MDL2 1025 1264 - -
Aed2g2328 1272 Gene3D ABC transporter type 1, transmembrane domain 35 626 IPR036640 GO:0005524|GO:0016021
Aed2g2328 1272 Gene3D - 361 610 IPR027417 -
Aed2g2328 1272 Gene3D - 1015 1266 IPR027417 -
Aed2g2328 1272 SMART AAA_5 398 590 IPR003593 -
Aed2g2328 1272 SMART AAA_5 1052 1246 IPR003593 -
Aed2g2328 1272 Pfam ABC transporter 1044 1194 IPR003439 GO:0005524
Aed2g2328 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 693 1008 - -
Aed2g2328 1272 Pfam ABC transporter 390 538 IPR003439 GO:0005524
Aed2g2328 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 332 - -
Aed2g2328 1272 Pfam ABC transporter transmembrane region 49 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g2328 1272 Pfam ABC transporter transmembrane region 703 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2328 Aed-Chr2 26590226 26596612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2328 24 1265 Calmodulin-binding Proteins AT2G36910 44.064 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2328 K05658 - gmx:100802547 2221.05