Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2317 ATGTCAGGAAAGATAATTATCTCAGCTGTTTCTCTCATCCTCGTGGTGAGTGTGGCCATCGGTGTTGTGGTTGCCGTCAACAAGAAGGCCGGAGAGGATCCCACAATACAATCTCATCAAAAATCCGTAGGGATTATATGCCAAAACACTGATGACCAGAAACTCTGCCATGACACTCTCAGCTCCGTGAAGGGCCTTGATACCGCAGATCCAAAGGCTTACATTGCCACGGCGGTGAAAGCCACCATGGACAGCGCTATCAAAGCTTTCAACATGAGTGACAAGCTCACAACCGAGTATGGAGGTAGCGATAAAGGCACCAAGATGGCCTTGGATGATTGCAAGGACTTGTTGCAATCAGCGATACAGAGCCTCCAGCTCAGCATTGACATGGTTCACAACAACAACGTGCAAGCAGTGCATAACCAACATGCTGATTTCAAGAATTGGCTTAGCGCTGTTATCTCGTACCAACAGGCTTGCATGGAAGGTTTTGACGATGGGAAAGAGGGTGAGAAGAAGATCAAGGACCAATTGCAAACCCAAAACTTGGACCATGTTCAGAAACTCACTGGAATCACCCTTGACATTGTGAGTAGTTTGTCCCACATCCTCGAGCAGTTTGGGTTGAAGCTTGACCTTAAACCCGCGTCTCGCCGTCTTCTTAGCAAGGATGGCTTACCCGCTTGGTTCTCTGGTGCCGATCGTAAGCTCTTGGGTCGTGGATGGAGAGCAAAGGTGAAGCCTAATGTTGTGGTTGCCAAAGATGGTTCTGGTCAGTTTAAAACTGTTGGCGAGGCTATTGCTTCCTATCCTAACAATCACCAAGGTAGATTCGTTATCTACGTTAAGGCTGGTATCTATGACGAGTACATCACCGTCCCCAAGACTGCAAAGAACCTTTTCATGTACGGTGATGGCCCTGGAAAGACCATCATCACCGGTAGCAAGAACTACGTCGATGGTGTCAAGACAATGCAAACTGCCACTTTCGCCAACACTGCTGAGGGGTTCATTGGCAAGGCAATGACATTCCAGAACACAGCCGGTGCTAAGGGTCACCAAGCTGTGGCATTCAGGAACCAAGGAGACATGTCAGCTCTGGTTGGTTGCCACATTTTGGGTTACCAAGACACCTTGTACGTTCAAACCAACAGGCAATTCTACCGTAACTGCGTCATTTCCGGTACCGTCGATTTCATCTTCGGCACCTCCAGCACTTTGATCCAGCACTCCGTCATCATCGTGAGGAAGCCCCTGGACAACCAATTCAACACAGTCACCGCCGATGGCACAGCCCAGAAGAACATGGCTACAGGAATTATTATTCAGGGTTGCAACATTGTCCCAGAAGCCGAACTCTTCCCTACCAGGTTCCAAGTGAAGTCATACTTGGGCAGGCCATGGAAGCAATTCTCAAGGACAGTGGTCATGGAATGTTCCATTGGTGACTTCCTTCACCCCGATGGATGGGTCCCATGGGCCGGGTCATTTTTTGAAGACACCTTGTACTATGCTGAGTACAACAATGACGGACCTGGTGCCAACATTAACGGAAGGATCAAGTGGAAGGGTTATCATGCTTCCATTAGCCGCGAAGAAGCTACTCAGTTCACTGCTACCCAATTCCTCCAGGCTGGATCAAACGGTGGAACTGATTGGTTGAAGGCTCTCCATGTTCCTCACTCCCTTGACTTCGTCAAACCTTGA 1710 0.4895 MSGKIIISAVSLILVVSVAIGVVVAVNKKAGEDPTIQSHQKSVGIICQNTDDQKLCHDTLSSVKGLDTADPKAYIATAVKATMDSAIKAFNMSDKLTTEYGGSDKGTKMALDDCKDLLQSAIQSLQLSIDMVHNNNVQAVHNQHADFKNWLSAVISYQQACMEGFDDGKEGEKKIKDQLQTQNLDHVQKLTGITLDIVSSLSHILEQFGLKLDLKPASRRLLSKDGLPAWFSGADRKLLGRGWRAKVKPNVVVAKDGSGQFKTVGEAIASYPNNHQGRFVIYVKAGIYDEYITVPKTAKNLFMYGDGPGKTIITGSKNYVDGVKTMQTATFANTAEGFIGKAMTFQNTAGAKGHQAVAFRNQGDMSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSSTLIQHSVIIVRKPLDNQFNTVTADGTAQKNMATGIIIQGCNIVPEAELFPTRFQVKSYLGRPWKQFSRTVVMECSIGDFLHPDGWVPWAGSFFEDTLYYAEYNNDGPGANINGRIKWKGYHASISREEATQFTATQFLQAGSNGGTDWLKALHVPHSLDFVKP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2317 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 203 IPR035513 -
Aed2g2317 569 SUPERFAMILY Pectin lyase-like 247 563 IPR011050 -
Aed2g2317 569 SMART PMEI_2 38 197 IPR006501 GO:0004857
Aed2g2317 569 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Aed2g2317 569 PANTHER PECTINESTERASE 3 564 - -
Aed2g2317 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 202 IPR035513 -
Aed2g2317 569 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Aed2g2317 569 Gene3D - 244 566 IPR012334 -
Aed2g2317 569 PANTHER PECTINESTERASE 3 564 - -
Aed2g2317 569 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 200 IPR006501 GO:0004857
Aed2g2317 569 CDD PMEI-like_3 46 202 - -
Aed2g2317 569 Pfam Plant invertase/pectin methylesterase inhibitor 46 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2317 Aed-Chr2 26526060 26527769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2317 5 563 Carbohydrate Esterase AT3G05610 40.669 6.17e-136 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2317 K01051 - gmx:100781507 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2317 2 26526060 26527769 Aed8g1554 8 20814831 20817803 PCT
Aed8g1556 8 20821345 20823508 Aed2g2317 2 26526060 26527769 PCT