Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2302 ATGAAATGTGCAGGGCTGAAGAGATCGGGGAAAAGTTGCAGGTTAAGATGGCTTAACTACTTGCGTCCCGATGTTCGTCGCGGAAATATAACACTCCAAGAACAGATTACCATTCTGGACCTCCATTCTCGCTGGGGCAATAGGTGGTCGAAAATAGCTCGGCATCTTCCGGGTAGAACAGACAACGAAATAAAGAACTATTGGAGGACCCGAGTGATTAAGCAGGCGAGGAATCTCAAGTGTGACGTGGACAGTCAACAGTTCCAAGATGCTTTGCGTTATGTGTGGATGCCCCGTTTGATTGAGCGGATTCAGCCAGCACCATCGGAAACTCACCCAAACCCAACTGCTCCGCCCCAACAGCTGCCTCCTTCAGATTTAGATTCTGATGTTTGGGGTGTATGCGACAGTTTCAATAATGGGAATATCACGTTACCTTTAGGTGATGGGGATGACTTCATCAACAGTTTGTGGGAGGAGGATGAGAATATGTGGCTTATGCGACAACTTTCTCATGATCTGGAAATTCAAGACAATTTCCTTGCGTGA 549 0.4699 MKCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSQQFQDALRYVWMPRLIERIQPAPSETHPNPTAPPQQLPPSDLDSDVWGVCDSFNNGNITLPLGDGDDFINSLWEEDENMWLMRQLSHDLEIQDNFLA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2302 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
Aed2g2302 182 Pfam Myb-like DNA-binding domain 27 70 IPR001005 -
Aed2g2302 182 Gene3D - 31 72 - -
Aed2g2302 182 Gene3D - 2 26 - -
Aed2g2302 182 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 2 111 - -
Aed2g2302 182 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Aed2g2302 182 CDD SANT 31 70 IPR001005 -
Aed2g2302 182 SUPERFAMILY Homeodomain-like 7 72 IPR009057 -
Aed2g2302 182 MobiDBLite consensus disorder prediction 106 126 - -
Aed2g2302 182 SMART sant 26 74 IPR001005 -
Aed2g2302 182 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 111 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2302 Aed-Chr2 26417242 26417879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2302 2 168 MYB Transcription Factor Family AT1G48000 51.351 5.46e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed2g2302 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2302 K09422 - gmx:100797220 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2302 2 26417242 26417879 Aed2g2302 2 26417242 26417879 ECH
Aed2g2302 2 26417242 26417879 Aed8g0638 8 5528492 5529411 PCT