Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2301 ATGGAGAGGAGTTTATCATTATCAGGAAGTAGTGAAGAGGAGATGATGTCAATAACAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCCGTTCTCTTCAATTACATCACTGTCCACGGCGAAGGTCACTGGAACTCTGTGGCTCGCTACACAGCTCTAAAACGAACGGGCAAAAGCTGCAGATTAAGGTGGTTGAACTACTTGCGTCCAAACGTTCGACGTGGGAACATAACCCTCGAAGAACAGCTCATGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACAGTTACCGGGAAGAACAGACAACGAGATAAAGAACTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTCAAATGTGATGTCAACAGCAAGCAATTCAGAGACACGTTGCGTTTTGTATGGATGCCACGTATGTTAGAGCGGATCCAGGCTCAGTCATCATCATCATCAGCCAAAGCCCAAAGCTTAATCTCATCCAACGCTACTGAAGCACAGAGCGACCCTTGTGGAGTACTCAATGTCATGACCAACACCAACCCGGTTGATTTCCACGCGCCTTCTCTCTCTGACTCTAGCGCGTCTTACAATCCAATAATGGGTGGTGGTGGAAGTTGCTTATCGGAAGGTAACAGTAGCACCCTATCCCTATGGCAGCAGAACAACAATAGTAGCTACTACTCGGACATAGCCGGCAATGGTTTTGGTGGTGCTGACTTGTGGTCAGATGAAAATATTTGCTTTCTGCAACAGCAGCTTGCTGATGACTGA 798 0.4699 MERSLSLSGSSEEEMMSITITKGPWTEEEDSVLFNYITVHGEGHWNSVARYTALKRTGKSCRLRWLNYLRPNVRRGNITLEEQLMILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQSSSSSAKAQSLISSNATEAQSDPCGVLNVMTNTNPVDFHAPSLSDSSASYNPIMGGGGSCLSEGNSSTLSLWQQNNNSSYYSDIAGNGFGGADLWSDENICFLQQQLADD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2301 265 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Aed2g2301 265 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Aed2g2301 265 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Aed2g2301 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 12 193 - -
Aed2g2301 265 CDD SANT 24 69 IPR001005 -
Aed2g2301 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed2g2301 265 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Aed2g2301 265 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Aed2g2301 265 Gene3D - 79 120 - -
Aed2g2301 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Aed2g2301 265 Gene3D - 21 74 - -
Aed2g2301 265 SMART sant 74 122 IPR001005 -
Aed2g2301 265 SMART sant 21 71 IPR001005 -
Aed2g2301 265 CDD SANT 79 118 IPR001005 -
Aed2g2301 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2301 Aed-Chr2 26411361 26412979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2301 2 265 MYB Transcription Factor Family AT2G47190 47.826 9.70e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed2g2301 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2301 K09422 - gmx:100819467 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2301 2 26411361 26412979 Aed8g0639 8 5552356 5554115 PCT