Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2291 ATGGAGAATAATAATCAGAAGGAGCAGCCAGAGCAGCAAAGGGTCAATTTCAATTTCAATTTCAACGGAGACCCTCACACTCACACTCACGACAATGGCAACGGCAACGGCTTCAACCACTTCCAACCCACACCCTCCTCCATTCGCCCTGTATTTGAAGAACATGGAACTATTGTTGAGATTGTTCTTTTAAGAGATAAGAGAACTGGTACACGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATAAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACGTGAACGCCTGGAGGTGGTAGATAAAATATTTTCCCCTTACGGGCATGTTGAAGATATCTACTTTAAAAGCAGTCATGGATATGCTTTTGTCAAATTTTCCAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAGAACCTTCACAATGAGAGGTTGTGATCAGCCTTTCAATGTTCGTTTTGCGGATCCTAAGAAGCCTAGGACTGGAGAATCAAGGCCACTGCCAAATTTTGGTGATTCCAATAGTGGAGGAAATATTCTGCCTATTGCCCCGTATCATTCCACAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCTACTGTGTTACAACATCCATTTCCTTCCCAACAAGTGCATCCACAGGTGGCTTCAATGCCTTCGCGGTCAATTCAAGCTCCCAAATTGTCTTCTCATCCATTTATTACTGAGGTGCAAAGACAATCATATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGCCTTCTCAGACCGGTAGCAACCCCAGTACAGTTACTGGCAATACCCCGCCTGATATGCCTACAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTCATAAGTACTACTACAACTGTGTAACTTGTGAAAGCAGATGGGATAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCTGAAGCAGCAGGAGCAGGAGGATAATTGCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACTAGTTGGTCAAAAACAACAGGAAACAGATCATGGCCACAAGCAATCAGAAACAAGTCCTGTTGTTGGATAA 1209 0.4301 MENNNQKEQPEQQRVNFNFNFNGDPHTHTHDNGNGNGFNHFQPTPSSIRPVFEEHGTIVEIVLLRDKRTGTRQGSCFVKYATFDEADRAIKALNNKYTFAGESYPVVVKFADRERERLEVVDKIFSPYGHVEDIYFKSSHGYAFVKFSNREMALAAIKGLNRTFTMRGCDQPFNVRFADPKKPRTGESRPLPNFGDSNSGGNILPIAPYHSTIAHPQVTSHMQNWEPGATVLQHPFPSQQVHPQVASMPSRSIQAPKLSSHPFITEVQRQSYPADSSVQNIEQHLSSQLPSQTGSNPSTVTGNTPPDMPTSPQDEDFPECDWSEHYCPDGHKYYYNCVTCESRWDKPEEYALYEKESLKQQEQEDNCCSLSQLSLSSSQLVGQKQQETDHGHKQSETSPVVG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2291 402 ProSiteProfiles WW/rsp5/WWP domain profile. 322 349 IPR001202 GO:0005515
Aed2g2291 402 SUPERFAMILY RNA-binding domain, RBD 120 186 IPR035979 GO:0003676
Aed2g2291 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 165 IPR000504 GO:0003723
Aed2g2291 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 97 IPR000504 GO:0003723
Aed2g2291 402 SMART ww_5 317 349 IPR001202 GO:0005515
Aed2g2291 402 Pfam WW domain 320 347 IPR001202 GO:0005515
Aed2g2291 402 CDD WW 320 349 IPR001202 GO:0005515
Aed2g2291 402 MobiDBLite consensus disorder prediction 285 310 - -
Aed2g2291 402 MobiDBLite consensus disorder prediction 378 402 - -
Aed2g2291 402 ProSitePatterns WW/rsp5/WWP domain signature. 322 347 IPR001202 GO:0005515
Aed2g2291 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 180 IPR000504 GO:0003723
Aed2g2291 402 Gene3D - 40 118 IPR012677 -
Aed2g2291 402 SUPERFAMILY WW domain 321 353 IPR036020 GO:0005515
Aed2g2291 402 Gene3D - 119 187 IPR012677 -
Aed2g2291 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Aed2g2291 402 MobiDBLite consensus disorder prediction 285 317 - -
Aed2g2291 402 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 45 373 - -
Aed2g2291 402 MobiDBLite consensus disorder prediction 175 202 - -
Aed2g2291 402 Gene3D - 306 368 - -
Aed2g2291 402 PANTHER RNA BINDING PROTEIN 45 373 - -
Aed2g2291 402 SMART rrm1_1 113 176 IPR000504 GO:0003723
Aed2g2291 402 SMART rrm1_1 36 109 IPR000504 GO:0003723
Aed2g2291 402 SUPERFAMILY RNA-binding domain, RBD 44 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2291 Aed-Chr2 26351563 26359586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2291 44 126 Eukaryotic Initiation Factors Gene Family AT2G23350 33.735 2.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2291 K13207 - gmx:100795107 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2291 2 26351563 26359586 Aed2g2291 2 26351563 26359586 ECH