Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2287 ATGTCAAAGCGGAAGTTCGGGTTCGAAGGGTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCGCAGCCCCCTCAGCGACTCTACGTCCCTCCCTCCGCGCGCCAAGGCCACGACAACTATGAAGACACCGACCTCGACAACATCGAGTACGACGACAACAACAATGAGGAGGGGAATAAGAACAACAACGACGAAGACGAAATCGACCCCTTGGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCCGCGCCGCCGCCGCAGCCCAAGGAGAAGGCGGAGGACCGGTACCGTGACGACGAGGACGAGGATCCCATGGAGAGCTTTCTGAAGGCGAAGAAGGATTTAGGGTTGACTCTCGCCTCGGATGCGCTCCACGCTGGGTACGATTCCGACGAGGAGGTTTATGCTGCTGCGAAAGCTGTGGATGCTGGTTTGATTGAGTATGATTCTGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTTGATCACTCTTCCATTGATTACGAGCCGTTCAATAAGGATTTTTACGAGGAGACACCTTCAATATCAGGCATGAATGAGCAGGATGTCAGTGAATACAGGAAGAGTTTGGCTATTCGTGTATCGGGTTTTGACGTTCCCAAGCCAGTAAAGACATTTGAGGACTGTGGGTTTCCTTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCAACATTTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCTGGCAGGGATATCATTGGTATAGCAAAAACAGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCCGAGCTTCAGAAGGAGGAGGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAATTAGCACATCAGATATTTCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGTGGGATGTGAGATAGTTGTTGCTACCCCTGGTAGATTGATAGACATGCTGAAGATGAAGGCATTGACGATGATGAGAGCAACTTACCTTGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAGCCACAAGTAAGGTCCATTGTTGGGCAGATTAGGCCGGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCGCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGATCCTATTAGAGTAACTGTTGGAGAAGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCCGATTCTGAGAAATTGCCTTGGCTGCTGGAAAAGCTACCAGAAATGATTGATCAAGGTGATACCCTAGTTTTTGCTTCGAAAAAGGCTACTGTGGATGAAATTGAAGCACAGTTAGCTCAAAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCAGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGCTTTGCTGGTGAATTGGTCAATAGCTTAGTTGCAGCCGATCAGAATGTGTCCTTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGTAGAGGTGGCGGCGGAGGGGGTGGACGAGGCGTGCGAGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCAGAGTCAAACAATGCACCTTCTACCACAGCTCCCAGTCGTTCTGCCGCTGTAAATTCTTTGCGAACAGGAATAATGTCACAATTTAAGAGCAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCAGTAACAATACAAGCATGGCGGCTAATAAGAGACCAGCACTCACTGGTTTTGTATCCGGTGGATCAATTGGTGGTGACGTAAATACTTATCAGAATACTGCTTCACCCAATCCTGCTACATCAGCCCGAAATTTCACCAGTCAAGGTTCTGGAGTAAATCCTGGTCAGAAGAGCACGAACAGCTCTAAACCTAAAGAAAGGCGTAGGCCATCAGGTTGGGATAGATAG 2307 0.4668 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSARQGHDNYEDTDLDNIEYDDNNNEEGNKNNNDEDEIDPLDAFMEGIHEEMRAAPPPQPKEKAEDRYRDDEDEDPMESFLKAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMNEQDVSEYRKSLAIRVSGFDVPKPVKTFEDCGFPSQIMNAIKKQGYEKPTFIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKVGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIEAQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAADQNVSLELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGRGVRGVDFGLGIGYNPESNNAPSTTAPSRSAAVNSLRTGIMSQFKSNFVAASSNSQNQGFSNNTSMAANKRPALTGFVSGGSIGGDVNTYQNTASPNPATSARNFTSQGSGVNPGQKSTNSSKPKERRRPSGWDR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2287 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 597 IPR027417 -
Aed2g2287 768 MobiDBLite consensus disorder prediction 610 635 - -
Aed2g2287 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 603 IPR001650 -
Aed2g2287 768 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 652 - -
Aed2g2287 768 Gene3D - 431 607 IPR027417 -
Aed2g2287 768 SMART helicmild6 482 563 IPR001650 -
Aed2g2287 768 CDD SF2_C_DEAD 441 573 - -
Aed2g2287 768 SMART ultradead3 242 444 IPR014001 -
Aed2g2287 768 MobiDBLite consensus disorder prediction 716 768 - -
Aed2g2287 768 Pfam Helicase conserved C-terminal domain 458 563 IPR001650 -
Aed2g2287 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 375 383 IPR000629 -
Aed2g2287 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
Aed2g2287 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 652 - -
Aed2g2287 768 Pfam DEAD/DEAH box helicase 249 418 IPR011545 GO:0003676|GO:0005524
Aed2g2287 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 429 IPR014001 -
Aed2g2287 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 432 IPR027417 -
Aed2g2287 768 MobiDBLite consensus disorder prediction 1 108 - -
Aed2g2287 768 Gene3D - 186 430 IPR027417 -
Aed2g2287 768 MobiDBLite consensus disorder prediction 754 768 - -
Aed2g2287 768 MobiDBLite consensus disorder prediction 716 753 - -
Aed2g2287 768 MobiDBLite consensus disorder prediction 56 108 - -
Aed2g2287 768 CDD DEADc_DDX42 234 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2287 Aed-Chr2 26307139 26310875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2287 223 579 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 4.42e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2287 K12835 - gmx:100814854 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2287 2 26307139 26310875 Aed2g2287 2 26307139 26310875 ECH