Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2245 ATGACTGCTTCGGAGTTAGACGTTGAATCCAAGTATGCCCGCAACGGCAAGGTTATGGCGGGCACTGCGATTCTTCTCTTCATTCTTGTAATATTCATTATTTGCTTCCACACCTACGTTCGCTTCTGCCGCCGTCGCCGCCGCCGCCTCTTCTTCTCTCAGTCGCTTCCGATCAACTCCTCCGGCGACGACCCATGCCTTGACCCTTCCGTTCTCAAGTCCCTTCCCACTTTCTCTTTCTCCGCCGCCACCCACCGCTCTCTCCAGGAATGCGCCGTGTGCCTCTCGGAGTTCACCGACGGCGACAAAGGCCGCCTGCTCCCGAATTGTAACCACGCTTTCCACGCCCAATGCATCGACACGTGGTTTGGGTCGCACTCCACGTGTCCTCTCTGCCGAACCACGGTCCAACCGGACATGGGTTCTGCTGACACCGAATCGGGTTCGGATCCGGTTTCCGAAGTGGGCGAGGGTTGCTCCTCTTCGTCGTTGCCTGCGGGGGTTGGGTGTCCGAGAAAGCCGTTGGGCATAATCGTAGAGATTCCAGATGTGGAAATTAGAGGCTCGGATCCTGCAACCGGAGATCAAGGGTTCAGATGGTCATTGAAGAGGTTTTGCAACGTTTAA 627 0.563 MTASELDVESKYARNGKVMAGTAILLFILVIFIICFHTYVRFCRRRRRRLFFSQSLPINSSGDDPCLDPSVLKSLPTFSFSAATHRSLQECAVCLSEFTDGDKGRLLPNCNHAFHAQCIDTWFGSHSTCPLCRTTVQPDMGSADTESGSDPVSEVGEGCSSSSLPAGVGCPRKPLGIIVEIPDVEIRGSDPATGDQGFRWSLKRFCNV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2245 208 CDD RING-H2_EL5_like 90 133 - -
Aed2g2245 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 141 IPR013083 -
Aed2g2245 208 SUPERFAMILY RING/U-box 71 141 - -
Aed2g2245 208 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Aed2g2245 208 SMART ring_2 91 132 IPR001841 -
Aed2g2245 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 157 - -
Aed2g2245 208 Pfam Ring finger domain 90 133 IPR001841 -
Aed2g2245 208 PANTHER RING-H2 FINGER PROTEIN ATL64 9 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2245 Aed-Chr2 26043598 26044224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2245 12 207 Rapid Response to Elicitors AT3G16720 39.331 1.63e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2245 - - gmx:102665377 310.457