Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2244 ATGATAATTAAGCGGAGTATGAAAACCGGAATACTGAAGCGGAAACCGTGCAAGCTAGAGAACTGCAAGAATTCTGCGATTCAGAAGAAGCAGAGAGTAAACGAGGTTTATTCTGTTGAAGGAGGATCCTCTGGCTCTGGATCCAGTGAGATGCTGTCCAATTCAACAATTTCAGTGGACTCGAATGTCATAATTAAAGACTTGGCCCCACAATCAGAACAAGGGAATGAGAATGAGATTCGATCTCGGTCTTCCAAAGGTCGAGCTAAGAAGCTTCCCAGCAGGTTCAATGGTTCTGCTGTTCACGAACGCCCCCGGCTTGAAGATGAGAATAAGAATAAGAACACTTTACAAGACGTTGCTGACAAGAGAAACGAAACAGTTTCTCCACATTCTGCTCAGTCCAGCGATTTTGAGTACTCGGTTAAGACTGTTAAAAAAACGGTTAATGGGGGTCGTGCATTGCTGGTTAAAGAAAAGATTAATGATGCTGCTGGACCTATCTCCAATGCTGAGGGTGTGGATGGGAATGGGAATGGTAAAAAGAAAGATATTTACAAGTTAGAGGATTTTGTTTTGGGGGATATAGTTTGGGCAAAATGTGGGAAGAAGCATCCTGCTTGGCCTGCTACAGTCATTGATCCCTTCTTGCAAGCTCCCAAATCCGTCTTAAGCTGTTGTGTTCCTGGTGCACTCTGTTCTTTGTTCAGATTGCCGGGGCAGACCCAATTGTGCAAAAGTAAAGCAAGTGACTTTCTCGCGGCAGTGGATGAGGCAATGTTGGTAGATAACGGGTTTTTGGACTTACAATTGGGAGCTGACCAAGATATGGATGGTGTTGATTCCAGTGTTGACCAGGAATGTACCTCTCAAGACCAGGATACAATACCTTGTGCTGGCTGTGGTTTGATGTCACCATGCAAAACCATGAAGAAGATTAAGGATGCAAGTTCTGCTCGTCAGCACTATTGCAAGCCTTGTGCAAAGTTAATAAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGGATTGGGTATGCTGTGATGGTTGCAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAAGTTATCAAGGATCTGGAAAATTCGGATTACTATTGCCCCGATTGCAAGGGAAAATCCAATTGTGAATCATCAACATCAAAAACACACAAGCCAAAAAATATATCAACGGAGAATAGCCAAAGACCTGCATTACCTGAAAATCTAGCGGTGGTTTGCAATGGCATGGAAGGAAACTATATTCCAAAGGATCATTTGGTTATGTGCAAGTGTGGCTTGTGTGATTCAAGAACGCTTACACTTCCCGAATGGGAAAGACATACAGGTTGCAGAGCCAAAAAATGGAGGAATAGTGTGAAAGTACAAAGCACAAGGCAACCGCTAAAAGAATGGATGGATAAACACAATTCCGGGGCTGGAACTTCCCAGCAGTTAGATCAGCAACAAATACTCTCCTTTTTGCAAGGTGCCAAATTGCTGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCATGACTTTACTTCCTGGAGTCTGTGAAACTCCTGATGTTGAGAGAGAGTGCTGTCTCTGCCCAGTAAAAGGCATGTCATCTACATCTAGTGGGGCTCTGAAGCCAACTGATATTGAGACGTTGTGGGTTCATGTCACATGCGGTTGGTTTCAGCCAGAAGTTCTTTTCCAAAATCACGAGACAATGGAACCAGCCTCTAGAATCCTCAAGATTCCTCGTAGTTTCTTTTCAAAGATTTGTGTGATCTGTAAGCAAAGTCACGGTTCCTGTATAAGTTGTTGCAAGTGTGCTACATCTTTTCATGTCATGTGCGCGTCAAGAAAGGGATATAGCATGGAATTGCATTCGACAAAAAGGAATGGGACTCTAATCACGAAGAAGCTAATATATTGTGCAACTCACAGGGAGCCAAACCCAGATTCAGGTCTGGTTGTACATACACCCAATGAGATATTCTCACCGTCATCTCTTCAAAATCACCGGAGGTGCCTCAGGGGATCAAGGCAAAGGCAAAGGCTGGTTTCATCAGAGAATAATGTACAACTTCTTCAACCTTCCAACTCTGAAATTTCTGTGATTGATCCACTGTCTGCTGCCAGATGTCGTGTGTACGAAAGGTCTTCCAATAAGAAGGATGATGTGTGTGTGCCAGATGCGCAAGTACATTCTTTTCTTAAGGAACGTATTCACCATTTACAGAAAACAGAAAACCAAAAAGTCTGCTTAGGAAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGCGGTGAGCAGATACGACGCAGTATCACTGACCTAAGGGAAGCACAGTATCGTTCAGTAGGCAAAGATTGTTATTTCTTCAAGATTAGTGAGGAAGTGGTGATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTTTGCCTTTGGGTGATCAGGATCAGGAGAATCAGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATGATTACAGTTTCGACGATGAGGATGAAGAATGGGTTGACTGTCACTGTAAAGCCCCTCAATGTAGGAAATATATGACCTAG 2709 0.4304 MIIKRSMKTGILKRKPCKLENCKNSAIQKKQRVNEVYSVEGGSSGSGSSEMLSNSTISVDSNVIIKDLAPQSEQGNENEIRSRSSKGRAKKLPSRFNGSAVHERPRLEDENKNKNTLQDVADKRNETVSPHSAQSSDFEYSVKTVKKTVNGGRALLVKEKINDAAGPISNAEGVDGNGNGKKKDIYKLEDFVLGDIVWAKCGKKHPAWPATVIDPFLQAPKSVLSCCVPGALCSLFRLPGQTQLCKSKASDFLAAVDEAMLVDNGFLDLQLGADQDMDGVDSSVDQECTSQDQDTIPCAGCGLMSPCKTMKKIKDASSARQHYCKPCAKLIKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECDKISSKVIKDLENSDYYCPDCKGKSNCESSTSKTHKPKNISTENSQRPALPENLAVVCNGMEGNYIPKDHLVMCKCGLCDSRTLTLPEWERHTGCRAKKWRNSVKVQSTRQPLKEWMDKHNSGAGTSQQLDQQQILSFLQGAKLLSTKNAMGQRMFMTLLPGVCETPDVERECCLCPVKGMSSTSSGALKPTDIETLWVHVTCGWFQPEVLFQNHETMEPASRILKIPRSFFSKICVICKQSHGSCISCCKCATSFHVMCASRKGYSMELHSTKRNGTLITKKLIYCATHREPNPDSGLVVHTPNEIFSPSSLQNHRRCLRGSRQRQRLVSSENNVQLLQPSNSEISVIDPLSAARCRVYERSSNKKDDVCVPDAQVHSFLKERIHHLQKTENQKVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQIRRSITDLREAQYRSVGKDCYFFKISEEVVIDATDKGNIARLINHSCMPNCYARILPLGDQDQENQIVLIAKTNVSAGEELTYDYSFDDEDEEWVDCHCKAPQCRKYMT 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2244 902 Pfam SET domain 771 878 IPR001214 GO:0005515
Aed2g2244 902 SUPERFAMILY Tudor/PWWP/MBT 189 261 - -
Aed2g2244 902 Gene3D SET domain 669 902 IPR046341 -
Aed2g2244 902 ProSiteProfiles Extended PHD (ePHD) domain profile. 536 657 IPR034732 -
Aed2g2244 902 MobiDBLite consensus disorder prediction 68 137 - -
Aed2g2244 902 ProSiteProfiles Post-SET domain profile. 886 902 IPR003616 -
Aed2g2244 902 Pfam PHD-zinc-finger like domain 538 656 - -
Aed2g2244 902 SUPERFAMILY FYVE/PHD zinc finger 334 393 IPR011011 -
Aed2g2244 902 ProSiteProfiles Zinc finger PHD-type profile. 334 390 IPR019787 -
Aed2g2244 902 PANTHER PHD FINGER PROTEINS 522 901 - -
Aed2g2244 902 PANTHER PHD FINGER PROTEINS 1 507 - -
Aed2g2244 902 MobiDBLite consensus disorder prediction 391 412 - -
Aed2g2244 902 Pfam PHD-finger 336 389 IPR019787 -
Aed2g2244 902 CDD PHD_TCF19_like 337 387 - -
Aed2g2244 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 395 IPR013083 -
Aed2g2244 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 659 IPR013083 -
Aed2g2244 902 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 522 901 - -
Aed2g2244 902 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 507 - -
Aed2g2244 902 SUPERFAMILY SET domain 753 899 IPR046341 -
Aed2g2244 902 Gene3D - 181 229 - -
Aed2g2244 902 ProSiteProfiles SET domain profile. 760 879 IPR001214 GO:0005515
Aed2g2244 902 MobiDBLite consensus disorder prediction 101 126 - -
Aed2g2244 902 SMART PHD_3 601 657 IPR001965 -
Aed2g2244 902 SMART PHD_3 336 388 IPR001965 -
Aed2g2244 902 CDD SET_SETD1-like 749 898 - -
Aed2g2244 902 SMART set_7 760 885 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2244 Aed-Chr2 26034282 26040115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2244 300 361 EF-hand Containing Proteins AT5G28340 59.677 1.70e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed2g2244 zf-HC5HC2H_2 2.4e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2244 - - gmx:100785063 1267.68