Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2225 ATGCCCCTTACGATTCCTGAACCCTTACGAATAATTTTCCTGGGAAACAAAGCAGAGAGGAGTTGTCACTCGAAATTGAATTCAATGGCGACGAGAAATCGAACTGTGTTGTTCAGAAAACACAGAGACGCCGTGAAAAGCATGCGTGCTCCTCTCTCCTCCTCCTCCTCCTCAGCATCTGCTTCCACCGGTCCTGTCATCGAAATGGTTACCACTAAGTTTCTTCCTTCCAATCGATCCTCCTATGCTCCTCTGAGCACCCAGGAACCCGGTCCATCCACTTCTAGGGATGCTTTGACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATCGCTACGAATATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCATCCTTTGGGGATGGCAAAGAGGATCAGCGTCTTATCGAGACTCTCACCCTAGAAATTACGTCTCTCCTCAGAAAGTCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTGCTGGATCTTCTGAGGATTCTAATGTTCGGAAAAATGTACAGCGCTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACGTTTGCAGCAGCAACAAGAGGGTTATGATGGGGTTGACTTGGAGTTGAACTTTAACGGGAGTAAATTTGGATCATATAATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAGAAGTGAGCAGATCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGCAATCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTAGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCTGTTGAAGAGGGTCTTAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGATTATGTGTGGAACGACGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTAAAGGAGATCCTCTTCTAG 1056 0.446 MPLTIPEPLRIIFLGNKAERSCHSKLNSMATRNRTVLFRKHRDAVKSMRAPLSSSSSSASASTGPVIEMVTTKFLPSNRSSYAPLSTQEPGPSTSRDALTVGLPPSWVDDSEEIATNIQRARVKISELTKAHAKALMPSFGDGKEDQRLIETLTLEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQQEGYDGVDLELNFNGSKFGSYNDEFSDVGFSEEQMTKLKRSEQISEEREREIEQAIHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCGTTLVIMCFVMLVLLILKEILF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2225 351 Gene3D - 104 309 - -
Aed2g2225 351 SMART tSNARE_6 253 317 IPR000727 -
Aed2g2225 351 Pfam SNARE domain 291 343 IPR000727 -
Aed2g2225 351 CDD SNARE_syntaxin16 270 316 - -
Aed2g2225 351 MobiDBLite consensus disorder prediction 78 95 - -
Aed2g2225 351 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 255 317 IPR000727 -
Aed2g2225 351 SUPERFAMILY t-snare proteins 103 310 IPR010989 GO:0016020|GO:0016192
Aed2g2225 351 SMART SynN_4 98 214 IPR006011 GO:0016020
Aed2g2225 351 Coils Coil 254 281 - -
Aed2g2225 351 PANTHER SYNTAXIN 29 346 IPR045242 -
Aed2g2225 351 PANTHER SYNTAXIN OF PLANTS PROTEIN 29 346 - -
Aed2g2225 351 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2225 Aed-Chr2 25926845 25929978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2225 29 351 SNARE and Associated Proteins AT5G26980 66.463 4.65e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2225 K08489 - gmx:100803629 534.643