Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2210 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCGGGCGTTGGATTCAAGAAACTCAAGAAGATCTTGAAGAAGTGCAGGAAAACCTCTTCATCCCAGAAACCCCTTAATGCATCCCTTGTCGCCAAAACCTGCCCCGACCATTGTCCAGTGTGCGATGGAACCTTCTTCCCTTCACTTCTGAATGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGTGCGCAGAAATTGTTGGGGTTACATCTCGCTTCTGGGGTCAGAAAGTACTTATTCTGGATCAAAGGCAAATTACAAGGGAGCCATACTGCTCTGATTCACGAAGGCAAAGATCTTATTCATTATTCCAAGCAAGGACAAATGTTCAAGTCGCAGGTACAGAGTATGCACAAGGAGATTCTTCAAAGCCCCTGGCTCTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGCCACCTGCTTTGTTCGATGGATGTTCTCTCACATTCAAGGATGGGAAACCGTCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGCTATATCTGTGCATCCTCGGCTGCATCAGTATCTATTGTTAACAAACTTAAGTCTGCAGATCCTAAAATGAAATGCCCTCTATGTCGTGTGGGTGCAGTTTATGAAGGTGCTGTGCGGTTGGAAGAACTAAATATTCTGTTAAGCCAGAGCTGTAAGGAATACTGGGAGCAGAGGCTTCAGACAGAGAGGGTGGAGAGGATTAAGCAGATTAAGGAACACTGGGATTCACAATGCAGGGCATTCGTCGGCGTCTAA 915 0.4437 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRKTSSSQKPLNASLVAKTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLGLHLASGVRKYLFWIKGKLQGSHTALIHEGKDLIHYSKQGQMFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKPPALFDGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICASSAASVSIVNKLKSADPKMKCPLCRVGAVYEGAVRLEELNILLSQSCKEYWEQRLQTERVERIKQIKEHWDSQCRAFVGV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2210 304 SUPERFAMILY RING/U-box 193 251 - -
Aed2g2210 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 304 - -
Aed2g2210 304 Pfam RING-type zinc-finger 200 246 IPR027370 -
Aed2g2210 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 304 IPR033326 -
Aed2g2210 304 SMART ring_2 200 248 IPR001841 -
Aed2g2210 304 ProSiteProfiles Zinc finger RING-type profile. 200 249 IPR001841 -
Aed2g2210 304 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Aed2g2210 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 302 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2210 Aed-Chr2 25858191 25860945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2210 197 249 C3H Transcription Factor Family AT4G28270 39.655 1.11e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2210 K16275 - gmx:100797432 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2210 2 25858191 25860945 Aed2g2210 2 25858191 25860945 ECH
Aed8g0726 8 6224396 6227410 Aed2g2210 2 25858191 25860945 PCT