Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2186 ATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGATTTCAGCGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACAAGCACTGAGGTGAAGAAAAGGGTGTATGTGTGCCCTGAGCCATCATGCGTGCACCATAACCCAGCTCGTGCATTAGGGGACCTCACTGGCATCAAAAAACACTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATACGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTAACAGAAGAAAACAACCGAGTGAACCAGGGATTAACAAGTGGAATGCCACCAAACTTGCAAAGTCAAATACCGGATCTGATGTCTAGCATGCCCTTAACCACTAGTCCCAACAACACAGCATCAAAATTCGGGGACTATGACCCTAAGAACCCACTGAAATCACTGGCTCAAGAACTAGTCCCAATACCATTCAAGTCCATGAGCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTCGGTGGGCACCAAAAAACCATGTCCCCTTCTTCTTCCAGTCTCCAGCTAGGCTCAAGCACCTCATCAAGCTTCAATTACTTGCAAGACAGCAAAAACGGAGGAGGACTAATTGCTGCTCAAATGTCTGCAACAGCTTTGTTACAGAAAGCGGCACAAATGGGTGCCACTGCAAGCAACAATAATAGCATTAACTCACCCATGATGCAAAAAGGCACCTTTGTTGTTAGTGGCACTGGCACCACTACTACTACTATGCTTCAGCATAACAACAACAACAACTCCTCCTATGACCACTTCTCTCCACAGCCTGATCATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCTTTCATCAATCAGCTGTTTCATAAAGGACAAGATATTTCACATGTTTTTCTTGACACTAACAACAATCCCGGTTCTGCAGCAATGAATGATGTTGGAATGTTCAGCCAAATGCCAATGGGGGGGAGTGACCACAACCACAACCACAACACCGGGTTGATGAAGAATGTGGAACAAGAGGTTAGTAACGGTGGTTCTATGCAGCCATCATCAAGGTTTGGAGGGAGTACTGACATGACTACTGTTCATGACTTCTTGGGGATTGGTGGCTCAACTTCTAGAGTTATGAATCATTTTCATCACCATTTTCCACACGAGGATTCGGCTATGGAGGAACCCATGTGGGATGTTTGA 1347 0.461 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSSMPLTTSPNNTASKFGDYDPKNPLKSLAQELVPIPFKSMSMGGGMFSTNAGALFGGHQKTMSPSSSSLQLGSSTSSSFNYLQDSKNGGGLIAAQMSATALLQKAAQMGATASNNNSINSPMMQKGTFVVSGTGTTTTTMLQHNNNNNSSYDHFSPQPDHLSNMAGVSGGGAFINQLFHKGQDISHVFLDTNNNPGSAAMNDVGMFSQMPMGGSDHNHNHNTGLMKNVEQEVSNGGSMQPSSRFGGSTDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAMEEPMWDV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2186 448 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Aed2g2186 448 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Aed2g2186 448 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 433 - -
Aed2g2186 448 Gene3D Classic Zinc Finger 6 48 - -
Aed2g2186 448 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Aed2g2186 448 Gene3D Classic Zinc Finger 60 140 - -
Aed2g2186 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 433 - -
Aed2g2186 448 SMART c2h2final6 47 77 IPR013087 -
Aed2g2186 448 SMART c2h2final6 6 28 IPR013087 -
Aed2g2186 448 SMART c2h2final6 82 102 IPR013087 -
Aed2g2186 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2186 Aed-Chr2 25741778 25743398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2186 1 303 IDZ Gene Family AT3G50700 50.303 7.41e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g2186 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2186 - - gmx:100782774 736.873