Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2181 ATGGAGGAACACTCTGCTTCCGCGTCTGCATCTGCAACCAAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCAAGCTCCATGCTGCAGCCAGGTCTTTCCATGTCGTCACTGCCACAACGACGCCGTGAACTCATCTAGCAACCCTAAGGATCATCATGAACTTGTTAGACGCGATGTTAATCGAGTTGTATGCTCTGTTTGTGATACCGAACAGGAGGTTGCCAAGGTGTGTTCTAACTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGTGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTGATGCTTGCTATTCAGTGAGCATGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTCCTGCCCTGTCTGTTTGGAGTACCAATTTGATTCAATAAACGGCAGCACCGTTTTGAAGTGTGGACACACAATGCATATGGAATGCTATCGAATGATGACAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTTGATGATATGTCTGAGAACTGGGAATATTTAGATCGGGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTAGACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAAGAAGAGTAA 783 0.4278 MEEHSASASASATKKREDFGKLQYGCEHYKRRCKIQAPCCSQVFPCRHCHNDAVNSSSNPKDHHELVRRDVNRVVCSVCDTEQEVAKVCSNCGVNMGEYYCEICKFYDDTDKGQFHCDECGICRVGGRDKFFHCKKCDACYSVSMQNNHSCVENSMKSSCPVCLEYQFDSINGSTVLKCGHTMHMECYRMMTTQNQYRCPICLKTIVDDMSENWEYLDREVSILCNDCNSTSTVSFHIFGHKCRQCGSYNTRRISKPKEE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2181 260 SUPERFAMILY Zinc hairpin stack 97 153 IPR037275 -
Aed2g2181 260 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 254 - -
Aed2g2181 260 ProSiteProfiles Zinc finger CHY-type profile. 19 94 IPR008913 GO:0008270
Aed2g2181 260 Gene3D - 222 259 - -
Aed2g2181 260 SUPERFAMILY RING/U-box 159 206 - -
Aed2g2181 260 Pfam Ring finger domain 159 202 IPR001841 -
Aed2g2181 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 221 IPR013083 -
Aed2g2181 260 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Aed2g2181 260 SMART ring_2 160 202 IPR001841 -
Aed2g2181 260 Pfam CHY zinc finger 26 106 IPR008913 GO:0008270
Aed2g2181 260 ProSiteProfiles Zinc finger CTCHY-type profile. 96 159 IPR017921 -
Aed2g2181 260 SUPERFAMILY CHY zinc finger-like 22 95 IPR037274 GO:0008270
Aed2g2181 260 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 17 254 IPR031109 GO:0008270|GO:0016567
Aed2g2181 260 Pfam Zinc-ribbon 214 252 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2181 Aed-Chr2 25686038 25690643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2181 18 254 C2H2 Transcription Factor Family AT3G18290 39.689 4.07e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2181 K10144 - gmx:100818374 494.197