Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2171 ATGAGTGGTGAAGCGCGGCCCTGCGACTACTGTGGCCACTCCACAGCACTTCTCTATTGCAGAGCCGATTCAGCTAAACTCTGTTTCTCATGCGATCGCGAGGTTCACTCAACCAACCAGCTATTCTCGAAGCACACTCGCACTCTTCTCTGCGACGCATGCGATGATTCCCCTGCGACCATACTCTGTTCCACCGAAACCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAAGCACAACCCTGCGCTCTCCGATTCCCTTCACGAGCGAAGACCACTCGAAGGCTTCACTGGCTGCCCTTCCGTCTCTGAACTCTTATCCGCCGTGGGGTTTTCTGATGTCAGCAAAAAATCTCTGCTTTCTTCGCCTCAGGGAAGCGGCGCTGATGGGTTCTTCGGTGGCGGCGAAATTGAAGGGCTTTCGGATTTGTTTGTGTGGGACACGCCTTCTTTTGTTTCGCTTGATGATTTGATTTCTTCTTCCGCTTCTTCTCGTAGCTTTCAGGCCATGGAGGTTCCTCCTCTGCCCAAGTATCGCAAGGCTGCCTGTGGGAGACACAAAGAAGAGATTCTTAGTCAGCTTCGGAAATTGGCCAAGTCGGAGCCATTGGACCTTGAACCATATGTGCAATCGGGTTTTGAACGTGTCCCGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTAACCCTTCATTGAGAACTTATACTGAAGAAATTCCAATTAAACATTCTACTCCTGCTGCTGGGGAAACTCACACCTATGGTGACATTGAAGGGACACCATCCATTTCTTTCAAGTCTGAAACCCTACCAACTACTCCCAAATCTGTGACATGTGAGTTAACGAGCCAAGAAAGAGATTCTGCATTATTACGATACAAGCAGAAGAAGAAAACGAGAAGGTTTGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGTCGATTTGCCAAGATGGACCAGGAACACTGA 1038 0.4904 MSGEARPCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTETSVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSAVGFSDVSKKSLLSSPQGSGADGFFGGGEIEGLSDLFVWDTPSFVSLDDLISSSASSRSFQAMEVPPLPKYRKAACGRHKEEILSQLRKLAKSEPLDLEPYVQSGFERVPEADIFPSHEWHRESSEPMYQVVPPNPSLRTYTEEIPIKHSTPAAGETHTYGDIEGTPSISFKSETLPTTPKSVTCELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMDQEH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2171 345 ProSiteProfiles Zinc finger B-box type profile. 3 50 IPR000315 GO:0008270
Aed2g2171 345 Pfam CCT motif 299 341 IPR010402 GO:0005515
Aed2g2171 345 Pfam B-box zinc finger 50 93 IPR000315 GO:0008270
Aed2g2171 345 Pfam B-box zinc finger 5 48 IPR000315 GO:0008270
Aed2g2171 345 SMART bboxneu5 3 50 IPR000315 GO:0008270
Aed2g2171 345 SMART bboxneu5 51 93 IPR000315 GO:0008270
Aed2g2171 345 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Aed2g2171 345 CDD Bbox1_BBX-like 7 50 - -
Aed2g2171 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 343 - -
Aed2g2171 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 4 343 - -
Aed2g2171 345 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
Aed2g2171 345 CDD Bbox1_BBX-like 50 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2171 Aed-Chr2 25616308 25619443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2171 6 314 C2C2-CO-like Transcription Factor Family AT2G47890 41.486 1.26e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed2g2171 zf-B_box 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2171 - - gmx:100777428 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2171 2 25616308 25619443 Aed8g0752 8 6448316 6451645 PCT