Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2161 ATGGAAGGCAAACAGGATGATTTGTACGCTCAGCTTTGGCGTGCATGTGCGGGCCAGTTTGTTGATGTGCCCCGGGTTGAGGACTTGGCTTACTATTATGCCCAGGGTCACCTGGAACAGGTTGCTGTATATACTCGGCATCAGCAAGATGGTCACATGGAAATTCCTGTGCACAATTTGGCTTCTAAGATCTTATGCCGGATTATGTCTGTTGAATTAAGGGCCGAAGCATTCACCGACGAAGTGTATGCACAGGTTACATTAGTTCCGGTAGCGCCAAAGGAAAGTGACTGTAGTAGTTTAGAGACTCCAGAAAATGACAAGATTCCTTCAAGTAGTAGTTTAGTGGTTCCAGAAAATGACCAGATTCCTTCCAGAACAAGCTATACTTTTAGCAAGACACTGACGCCGTCGGACACCAGCACTCACGGTGGTTTCTCCGTTCCGAAAAGACATGCAGATGGATGCTTCCCTCCGCTGGACATGACTCAACCAATACCATCGCAGGAAATTGTTGCAAAGGACTTGAATGGCCGTGAGTGGCGTTTTCGACACATTTATCGTGGTCATCCCAAACGACACTTGCTTACTACCGGCTGGAGCACATTCGTGACTGCAAAGAAGCTCCTTGCCGGAGATTCATGCATTTTCGTTAGTGGGGAATCTGGAGAAATCCGTGTTGGTGTTCGTCGATCAGCGACGCATCTCAACGATCTAGCCGCATTTCCATCTCTAATTTCGGGCCAAACCATGCAGATGGGAATTTTGGCCAACGCTTCTCACGCTATTACCACCCAAAGCATGTTTATCGTCTACTACCACCCATGGACGAATCCTTTTGAGTTTATTGTTCCACAGCAAACAATTGCAGGAACGATAATTGGTAATGAAGATATCGATAGGAGAAGGTGGCCTGGTTCTGAATGGAGGCGTCTGAAGGTCCAATGGGATGACAATGCCATAGTAGATGACAACATGCATCCTGAAAGGGTGTGTCCTTGGTGGATAGAGATCTTGGAATCTGCCAAGGAGAAGCATGTTCCTATTCTCCCCACCACTAAAAAGGCTCATGCTAATGTCATGAGTCAACGCTCTTCTTTGCCTGGATCAATTGGCTTTCCAATGAATAAAACTAGAATGACTTGTGATCTTGATTTATTGTCATCAGATGCGGCTCAGAATTCAGCCAGGCCTGCATCTCAGACTCCACTGCCTTTGCAAAGAGCACCAATCCGTGGCTCGCGGTTTGGGAAGGAAAATAGGAATCAGCTTCAGCTTCCTTTTCCCATGCAAGATCCTCACCATAAATCTCTGGGAAGATCAATGTCGTTTTCACCTGAAGACCTGTCAATTACAAGTTCAAATCTAAGCTCCATTGGTTCTGAATCCCTTGGATGGCCTAATAATGAATCTAAAACTGAAAAGAATGATGTTGGTCTTGGCCAGTCTGGAAGTTGTAGTGGGTTCAAGCTCTTTGGAGTTAGCTTAACTGACCGATCCCCGGAGCTCCCTTTGCTAGAGCAATTTGGTGTTGTCAGCAACAAGACTTCAAGTCTTGTTTCTACTCCTCCAGTGTCTGCTGCTGCTGCATCAGGGAAAACATGCAAGAAGTGTTGCGCTGTTAATACTCGTAGCTGCACCAAGGTGCTTAAGATCGGAACTGCTCTTGGAAGAGCAGTTAACCTTGCACGCTTTCATGGATTTGATGAACTCGTGGCCGAACTCGACTCGATGTTCGATTTTGGAGGTACCTTGATCGATGAAAGCAGTGGATGGCATGTCACCTGCATAGATGATGATGGAGACATGATGCTCCTATCCGACTTCCCTTATCAAGATTTGCAGGGTGTGGTGCAGAAGCTGATCATATGTCCAAAGGATGGTGTTAACAATCTGAAACCAAGCTCCTCAGGGAATCCTTCAAACCCTTAG 1932 0.4638 MEGKQDDLYAQLWRACAGQFVDVPRVEDLAYYYAQGHLEQVAVYTRHQQDGHMEIPVHNLASKILCRIMSVELRAEAFTDEVYAQVTLVPVAPKESDCSSLETPENDKIPSSSSLVVPENDQIPSRTSYTFSKTLTPSDTSTHGGFSVPKRHADGCFPPLDMTQPIPSQEIVAKDLNGREWRFRHIYRGHPKRHLLTTGWSTFVTAKKLLAGDSCIFVSGESGEIRVGVRRSATHLNDLAAFPSLISGQTMQMGILANASHAITTQSMFIVYYHPWTNPFEFIVPQQTIAGTIIGNEDIDRRRWPGSEWRRLKVQWDDNAIVDDNMHPERVCPWWIEILESAKEKHVPILPTTKKAHANVMSQRSSLPGSIGFPMNKTRMTCDLDLLSSDAAQNSARPASQTPLPLQRAPIRGSRFGKENRNQLQLPFPMQDPHHKSLGRSMSFSPEDLSITSSNLSSIGSESLGWPNNESKTEKNDVGLGQSGSCSGFKLFGVSLTDRSPELPLLEQFGVVSNKTSSLVSTPPVSAAAASGKTCKKCCAVNTRSCTKVLKIGTALGRAVNLARFHGFDELVAELDSMFDFGGTLIDESSGWHVTCIDDDGDMMLLSDFPYQDLQGVVQKLIICPKDGVNNLKPSSSGNPSNP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2161 643 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 288 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed2g2161 643 SMART B3_2 131 233 IPR003340 GO:0003677
Aed2g2161 643 Gene3D - 539 633 - -
Aed2g2161 643 CDD B3_DNA 131 231 IPR003340 GO:0003677
Aed2g2161 643 SUPERFAMILY DNA-binding pseudobarrel domain 118 241 IPR015300 -
Aed2g2161 643 PANTHER AUXIN RESPONSE FACTOR 288 636 - -
Aed2g2161 643 MobiDBLite consensus disorder prediction 96 120 - -
Aed2g2161 643 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Aed2g2161 643 PANTHER AUXIN RESPONSE FACTOR 4 287 - -
Aed2g2161 643 SUPERFAMILY CAD & PB1 domains 557 617 - -
Aed2g2161 643 MobiDBLite consensus disorder prediction 103 120 - -
Aed2g2161 643 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Aed2g2161 643 Gene3D - 281 345 - -
Aed2g2161 643 ProSiteProfiles PB1 domain profile. 544 626 IPR000270 GO:0005515
Aed2g2161 643 Gene3D - 129 232 IPR015300 -
Aed2g2161 643 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 287 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2161 Aed-Chr2 25562558 25568481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2161 6 634 B3 DNA Binding Superfamily AT1G59750 35.714 1.40e-117 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed2g2161 B3 2.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2161 - - gmx:100802387 819.305