LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g2161	ATGGAAGGCAAACAGGATGATTTGTACGCTCAGCTTTGGCGTGCATGTGCGGGCCAGTTTGTTGATGTGCCCCGGGTTGAGGACTTGGCTTACTATTATGCCCAGGGTCACCTGGAACAGGTTGCTGTATATACTCGGCATCAGCAAGATGGTCACATGGAAATTCCTGTGCACAATTTGGCTTCTAAGATCTTATGCCGGATTATGTCTGTTGAATTAAGGGCCGAAGCATTCACCGACGAAGTGTATGCACAGGTTACATTAGTTCCGGTAGCGCCAAAGGAAAGTGACTGTAGTAGTTTAGAGACTCCAGAAAATGACAAGATTCCTTCAAGTAGTAGTTTAGTGGTTCCAGAAAATGACCAGATTCCTTCCAGAACAAGCTATACTTTTAGCAAGACACTGACGCCGTCGGACACCAGCACTCACGGTGGTTTCTCCGTTCCGAAAAGACATGCAGATGGATGCTTCCCTCCGCTGGACATGACTCAACCAATACCATCGCAGGAAATTGTTGCAAAGGACTTGAATGGCCGTGAGTGGCGTTTTCGACACATTTATCGTGGTCATCCCAAACGACACTTGCTTACTACCGGCTGGAGCACATTCGTGACTGCAAAGAAGCTCCTTGCCGGAGATTCATGCATTTTCGTTAGTGGGGAATCTGGAGAAATCCGTGTTGGTGTTCGTCGATCAGCGACGCATCTCAACGATCTAGCCGCATTTCCATCTCTAATTTCGGGCCAAACCATGCAGATGGGAATTTTGGCCAACGCTTCTCACGCTATTACCACCCAAAGCATGTTTATCGTCTACTACCACCCATGGACGAATCCTTTTGAGTTTATTGTTCCACAGCAAACAATTGCAGGAACGATAATTGGTAATGAAGATATCGATAGGAGAAGGTGGCCTGGTTCTGAATGGAGGCGTCTGAAGGTCCAATGGGATGACAATGCCATAGTAGATGACAACATGCATCCTGAAAGGGTGTGTCCTTGGTGGATAGAGATCTTGGAATCTGCCAAGGAGAAGCATGTTCCTATTCTCCCCACCACTAAAAAGGCTCATGCTAATGTCATGAGTCAACGCTCTTCTTTGCCTGGATCAATTGGCTTTCCAATGAATAAAACTAGAATGACTTGTGATCTTGATTTATTGTCATCAGATGCGGCTCAGAATTCAGCCAGGCCTGCATCTCAGACTCCACTGCCTTTGCAAAGAGCACCAATCCGTGGCTCGCGGTTTGGGAAGGAAAATAGGAATCAGCTTCAGCTTCCTTTTCCCATGCAAGATCCTCACCATAAATCTCTGGGAAGATCAATGTCGTTTTCACCTGAAGACCTGTCAATTACAAGTTCAAATCTAAGCTCCATTGGTTCTGAATCCCTTGGATGGCCTAATAATGAATCTAAAACTGAAAAGAATGATGTTGGTCTTGGCCAGTCTGGAAGTTGTAGTGGGTTCAAGCTCTTTGGAGTTAGCTTAACTGACCGATCCCCGGAGCTCCCTTTGCTAGAGCAATTTGGTGTTGTCAGCAACAAGACTTCAAGTCTTGTTTCTACTCCTCCAGTGTCTGCTGCTGCTGCATCAGGGAAAACATGCAAGAAGTGTTGCGCTGTTAATACTCGTAGCTGCACCAAGGTGCTTAAGATCGGAACTGCTCTTGGAAGAGCAGTTAACCTTGCACGCTTTCATGGATTTGATGAACTCGTGGCCGAACTCGACTCGATGTTCGATTTTGGAGGTACCTTGATCGATGAAAGCAGTGGATGGCATGTCACCTGCATAGATGATGATGGAGACATGATGCTCCTATCCGACTTCCCTTATCAAGATTTGCAGGGTGTGGTGCAGAAGCTGATCATATGTCCAAAGGATGGTGTTAACAATCTGAAACCAAGCTCCTCAGGGAATCCTTCAAACCCTTAG	1932	0.4638	MEGKQDDLYAQLWRACAGQFVDVPRVEDLAYYYAQGHLEQVAVYTRHQQDGHMEIPVHNLASKILCRIMSVELRAEAFTDEVYAQVTLVPVAPKESDCSSLETPENDKIPSSSSLVVPENDQIPSRTSYTFSKTLTPSDTSTHGGFSVPKRHADGCFPPLDMTQPIPSQEIVAKDLNGREWRFRHIYRGHPKRHLLTTGWSTFVTAKKLLAGDSCIFVSGESGEIRVGVRRSATHLNDLAAFPSLISGQTMQMGILANASHAITTQSMFIVYYHPWTNPFEFIVPQQTIAGTIIGNEDIDRRRWPGSEWRRLKVQWDDNAIVDDNMHPERVCPWWIEILESAKEKHVPILPTTKKAHANVMSQRSSLPGSIGFPMNKTRMTCDLDLLSSDAAQNSARPASQTPLPLQRAPIRGSRFGKENRNQLQLPFPMQDPHHKSLGRSMSFSPEDLSITSSNLSSIGSESLGWPNNESKTEKNDVGLGQSGSCSGFKLFGVSLTDRSPELPLLEQFGVVSNKTSSLVSTPPVSAAAASGKTCKKCCAVNTRSCTKVLKIGTALGRAVNLARFHGFDELVAELDSMFDFGGTLIDESSGWHVTCIDDDGDMMLLSDFPYQDLQGVVQKLIICPKDGVNNLKPSSSGNPSNP	643

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed2g2161	643	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	288	636	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Aed2g2161	643	SMART	B3_2	131	233	IPR003340	GO:0003677
Aed2g2161	643	Gene3D	-	539	633	-	-
Aed2g2161	643	CDD	B3_DNA	131	231	IPR003340	GO:0003677
Aed2g2161	643	SUPERFAMILY	DNA-binding pseudobarrel domain	118	241	IPR015300	-
Aed2g2161	643	PANTHER	AUXIN RESPONSE FACTOR	288	636	-	-
Aed2g2161	643	MobiDBLite	consensus disorder prediction	96	120	-	-
Aed2g2161	643	Pfam	B3 DNA binding domain	131	232	IPR003340	GO:0003677
Aed2g2161	643	PANTHER	AUXIN RESPONSE FACTOR	4	287	-	-
Aed2g2161	643	SUPERFAMILY	CAD & PB1 domains	557	617	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g2161	Aed-Chr2	25562558	25568481	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g2161	6	634	B3 DNA Binding Superfamily	AT1G59750	35.714	1.40e-117	363

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Aed2g2161		B3	2.6e-23	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g2161	-		-	gmx:100802387	819.305

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