Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2157 ATGGCGGAGGAAAGTAAATCTAGCGAGGAAAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTGCTCGCAATGTTCCAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAAGACAAAGCAACTCGTGCTTCCCGAGGTTGTTGTTTCGTGATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCATAACAACAAGACTTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTCATGCCTTGATAAGTAGTTTTCTGTGGTCCTTGAATCCAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATTTCTGAACTTTTCTCCAAGCATGGAACTGTAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGATGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAAAAAGCACAGTCCCAAGCTTCTAATGCACCACACACTGATTCTCAGCACCCGTCGTTGTTTGGAGCTGTACCTATGAGTTATGTTCCTCCATATAATGGCTATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCATACCGCATGCCACCGATGCAGAGTCAACATGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCATACTGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAACAACTCTGCTGCATCTTCAGGTGCCGGCAAAAATTCTGGGGGTCAGGTTGAAGGACCTCCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCTTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATTGGTATGATGAATGGATACCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1329 0.4402 MAEESKSSEESVKLFVGQVPKHMTEPELLAMFQEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNNKTLPGASSPLQVKYADGELERLGHALISSFLWSLNPEHKLFIGMLPKNVSEVEISELFSKHGTVKDLQILRGSQQTSKGCAFLKYETKEQALDALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHTDSQHPSLFGAVPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYHTGMISPRPMNTSPGSVSPAGGNNNSAASSGAGKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGSVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIGMMNGYQLGGKKLKVQLKRDNKQGKPY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2157 442 CDD RRM3_CELF1-6 359 431 - -
Aed2g2157 442 CDD RRM1_2_CELF1-6_like 115 190 - -
Aed2g2157 442 Gene3D - 326 434 IPR012677 -
Aed2g2157 442 Gene3D - 1 97 IPR012677 -
Aed2g2157 442 CDD RRM1_2_CELF1-6_like 13 89 - -
Aed2g2157 442 MobiDBLite consensus disorder prediction 317 347 - -
Aed2g2157 442 MobiDBLite consensus disorder prediction 314 352 - -
Aed2g2157 442 MobiDBLite consensus disorder prediction 204 219 - -
Aed2g2157 442 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 5 429 - -
Aed2g2157 442 SUPERFAMILY RNA-binding domain, RBD 112 437 IPR035979 GO:0003676
Aed2g2157 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 179 IPR000504 GO:0003723
Aed2g2157 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 81 IPR000504 GO:0003723
Aed2g2157 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 429 IPR000504 GO:0003723
Aed2g2157 442 PANTHER RNA BINDING PROTEIN 5 429 - -
Aed2g2157 442 Gene3D - 109 203 IPR012677 -
Aed2g2157 442 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Aed2g2157 442 PRINTS Paraneoplastic encephalomyelitis antigen family signature 175 192 IPR002343 GO:0003723|GO:1990904
Aed2g2157 442 PRINTS Paraneoplastic encephalomyelitis antigen family signature 12 27 IPR002343 GO:0003723|GO:1990904
Aed2g2157 442 PRINTS Paraneoplastic encephalomyelitis antigen family signature 119 134 IPR002343 GO:0003723|GO:1990904
Aed2g2157 442 PRINTS Paraneoplastic encephalomyelitis antigen family signature 134 146 IPR002343 GO:0003723|GO:1990904
Aed2g2157 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 435 IPR000504 GO:0003723
Aed2g2157 442 SMART rrm1_1 358 431 IPR000504 GO:0003723
Aed2g2157 442 SMART rrm1_1 115 190 IPR000504 GO:0003723
Aed2g2157 442 SMART rrm1_1 13 89 IPR000504 GO:0003723
Aed2g2157 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 194 IPR000504 GO:0003723
Aed2g2157 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Aed2g2157 442 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2157 Aed-Chr2 25542297 25547531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2157 356 439 Eukaryotic Initiation Factors Gene Family AT1G71770 36.047 1.11e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2157 K13207 - gmx:100813239 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2157 2 25542297 25547531 Aed8g0762 8 6523058 6527878 PCT