Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2140 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGAGTGATTATGACCAGGAAGATGAAAACCCGGAGGGTGAACCTCCGAGTCAAGCAGTGACAAGCAGGTACTTGCAGGACAATGCAAGTGACAGTGATGATTCCGATGGCCAAAAGCGCGTTGTGAGGTCGGCAAAAGATAAGCGATTCGATGAGATGGCGTCCACTGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGTGAAGGTGCCGAATCTCTACATCAAGGCGCTTGTGATGTTGGAAGATTTCTTGTCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAGTTGGTTAATAAGTGCAGGGAGAATCCTGAGAGTGAGGAGGAAAAGGAGGAGGAGGAGAGCGAGGATGAGTATGAAAGTGGTGATGATTTTGATCCGGATCAGCTTCAGAAACCGGAAGCAAAATCTGATTCGGAAGCCTCTCAGTATGATGATGAGAAGCAGGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGGCTTTTGGATAGACAGTTCATGAAAGACCCCAGTGAGATCACGTGGGACACAGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGGGGTAGGAAGGGTACTGGCAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCCCAGTTTGATGTTAATCCAGGGCTCAATGGGCACATGCCCATAAATGTATGGAAAAAATGTGTGCAAAACATGCTGGTCATTCTTGATATTCTAGTGCAGTATCCAAACATAGTGGTTGATGATTCGGTGGAGCCAGATGAGAATGAAACTCAGAAAGGGATTGACCATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCCTGCAGTGCATTGATCCTCATACCCGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGATTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCGTCTAAGGTGGCTTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCAATGAAAAAGTTGACTGAGCTGACAGAGGACAGAGATGATGGAGGGGAGGCCAGTGAGGAGAAAGGATTTGAGGAATCAAGAATTCCTACAGCGTTTGTTGCTACCCCAGAGACTGTGGCCCGGAAGCCCACCTTCCCTGAGAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGTACGGAGATGAGCGAACTAAAGCACGAGCAATGCTCTGTGATATATACCACCATGCTGTTGTTGATGAGTTCTCAGTTGCCCGTGATCTGCTGCTCATGAGTCATTTGCAAGATAGTGTTCCACATTTGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTAGGGTTGGATTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTGTACTCTGGTGGAAGGGTGAAAGAGTTACTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGACAAATGCCATACCATATGCACATCAATCTTGAGCTCCTGGAGACAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCTGCTAATGTTCATGATGCAAAACGCAAGGTCATATCTAAGAATTTCCATCGCTTGCTTGAGATAAGCGACAAACAAACCTTCACTGGTCCACCAGAAAATGTTAGAGATCATGTTATGGCTGCCACGAGGGTTCTTACCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACAATGTGCTTGAAATGCTTAAGGACAAAATCAAGGAGGAAGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCCTTGAGCCTGGATCAACTCACAAAGTTTTTTGATCTCCCTGTTTCTCGTACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCGAGCTGGGACCAGCCAACTGGGTGCATACTTTTCCAAGATGTTGAACACTCCAGGCTGCAGGCATTGGCATTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGTAGAGATGGCCAGGACTATGCTGCTGGCGCTGCTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAAGCAGTGGGCGTGCAGGATATGGTGGAAGGCCAATGGCATTAGGCCAAGCAACTGGGAGTGGCTATTCAAGGGATCATCGGTCGGGACGAGGATCAGGTACTGGTTATCAGAGTGGAAGATTTCAAGGGGGTTCAGCATTGAGGGGACCCCATGGTGATGCATCTACGCGCATGGTTAGCCTCAAGGGTGTCCGTGCTTAA 2784 0.4583 MASRFWTQGGSDSEEESDYDQEDENPEGEPPSQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFDEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKALVMLEDFLSQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELVNKCRENPESEEEKEEEESEDEYESGDDFDPDQLQKPEAKSDSEASQYDDEKQDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVSARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIVVDDSVEPDENETQKGIDHNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLILAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTEDRDDGGEASEEKGFEESRIPTAFVATPETVARKPTFPENSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHAVVDEFSVARDLLLMSHLQDSVPHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLETVHLVSAMLLEVPNMAANVHDAKRKVISKNFHRLLEISDKQTFTGPPENVRDHVMAATRVLTKGDFQKAFDIIVSLDVWKFVRNRDNVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLPVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAGAAGSGTASSGGRWQDLSLSQPRQSSGRAGYGGRPMALGQATGSGYSRDHRSGRGSGTGYQSGRFQGGSALRGPHGDASTRMVSLKGVRA 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2140 927 MobiDBLite consensus disorder prediction 845 864 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 174 191 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 1 62 - -
Aed2g2140 927 Pfam PCI domain 657 785 IPR000717 -
Aed2g2140 927 MobiDBLite consensus disorder prediction 13 27 - -
Aed2g2140 927 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 - -
Aed2g2140 927 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 926 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed2g2140 927 MobiDBLite consensus disorder prediction 882 902 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 192 229 - -
Aed2g2140 927 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 42 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed2g2140 927 Gene3D - 723 793 IPR036388 -
Aed2g2140 927 SUPERFAMILY "Winged helix" DNA-binding domain 714 788 IPR036390 -
Aed2g2140 927 MobiDBLite consensus disorder prediction 835 927 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 133 229 - -
Aed2g2140 927 Coils Coil 143 170 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 133 153 - -
Aed2g2140 927 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed2g2140 927 SMART PINT_4 718 806 IPR000717 -
Aed2g2140 927 MobiDBLite consensus disorder prediction 154 173 - -
Aed2g2140 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 926 - -
Aed2g2140 927 MobiDBLite consensus disorder prediction 44 62 - -
Aed2g2140 927 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2140 Aed-Chr2 25430415 25434546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2140 1 927 Eukaryotic Initiation Factors Gene Family AT3G56150 68.353 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2140 K03252 - gmx:100805203 1623.99