Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2133 ATGCATTGTTCTGTTCTTGATTTGGGTCGCATCGCTCTTGCTGAGATGGAGTCTCAGGTGAAGCACGCCCTTGTTGTGAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTCAAAGGACCCGTTAGAGAAGGAGACATTCTCACCCTTCTCGAGTCTGAGAGGGAAGCAAGAAGGTTGCGTTAG 243 0.4774 MHCSVLDLGRIALAEMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2133 80 ProSitePatterns Ribosomal protein S28e signature. 71 79 IPR028626 -
Aed2g2133 80 Pfam Ribosomal protein S28e 19 79 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed2g2133 80 SUPERFAMILY Nucleic acid-binding proteins 16 80 IPR012340 -
Aed2g2133 80 CDD S1_S28E 21 80 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed2g2133 80 PANTHER 40S RIBOSOMAL PROTEIN S28 16 80 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aed2g2133 80 Gene3D - 13 80 IPR012340 -
Aed2g2133 80 PANTHER 40S RIBOSOMAL PROTEIN S28 16 80 - -
Aed2g2133 80 Hamap 30S ribosomal protein S28e [rps28e]. 16 80 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2133 Aed-Chr2 25396974 25398169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2133 16 80 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.45e-35 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2133 K02979 - gmx:100790570 103.99