Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2118 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTTGCCTCCTTGTTCTGCCCCTCAGATGAAGCATCTCTCTGCCATGCATGTGATCGCACCATCCACCATGCCAACAAGCTCGCTGACAAACACAAACGCTTCTCTCTTCACCACCCCACTTCCAAAGACTCCCCTCTCTGTGATATCTGTCATGAGAGGCGTGCGTATGTTTTTTGCAAAGAGGACAGAGCAATACTATGCAGAGAATGTGACCTTTCTATTCATGGGGTCAACGAACATACCAAGAAACACAACAGGTTTCTTCTCACTGGCGTAAAGATCGGTGTCGATGCTTCAGACCCAACATCGAATGAAGAAACAACAACAACAACCTCTTGTTCTAAAATAAACAGACCAAGTTCCTTCTCAAATGAAAATATCAGTTCTTCTCTCACTAGCAGCATATCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTCTAGATGCTTCATTTGCATCTAATGGTTTCTCTAAGAGTTTTGAGCATGAATCAGCGTTTCAGAACAAAGATATGTGTTCGTTCCCACTGCAAACGTGGGTACCACAATCTCAAGCTAGCAGCACTACTTCGAATCTTTATCCCCAGATTGATTCTTTAGTTGGAGTTATGGAAATGCCTAAAGCTAAGGCTGATTGGATACATAACTATGACGACACAGCCTTCAAAGTTCCTTCTATTACTCCTCCATTGATCAAGAAATGTAAACGCTCTCGTTAA 765 0.4288 MKIQCDVCHKEVASLFCPSDEASLCHACDRTIHHANKLADKHKRFSLHHPTSKDSPLCDICHERRAYVFCKEDRAILCRECDLSIHGVNEHTKKHNRFLLTGVKIGVDASDPTSNEETTTTTSCSKINRPSSFSNENISSSLTSSISEYLIQTIPGYCMEDLLDASFASNGFSKSFEHESAFQNKDMCSFPLQTWVPQSQASSTTSNLYPQIDSLVGVMEMPKAKADWIHNYDDTAFKVPSITPPLIKKCKRSR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2118 254 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 254 - -
Aed2g2118 254 Gene3D Classic Zinc Finger 1 102 - -
Aed2g2118 254 CDD Bbox1_BBX-like 57 100 - -
Aed2g2118 254 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 254 - -
Aed2g2118 254 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aed2g2118 254 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed2g2118 254 CDD Bbox1_BBX-like 5 47 - -
Aed2g2118 254 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Aed2g2118 254 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Aed2g2118 254 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed2g2118 254 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2118 Aed-Chr2 25287351 25289608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2118 1 254 C2C2-CO-like Transcription Factor Family AT1G75540 38.066 7.11e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed2g2118 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2118 - - gmx:100790232 420.624