Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed2g2113 | ATGGCTTCCGATTCTTCTCCTCCCAATTTCAACAATGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGAAACACCTTCTCGTCGCCGGGGACTAGACGCCGCCGGAGATCCTCCACTCCCTCCGCATTCGGGACCCCGTCAGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACTCCATCTGCGCCGCGCTCCCGTCAGAGAGGTGGCGGCGGGCGCGTTCCCGCCACGCCAACCTCCACCACCGATGACGTGCCTGTCTCGTCGGACGGCGGCGACGCCTTCGATATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACTAACATAAGCGTGGAAGACGTGAATGACGCGATTAAGAGGTTTTTGAGGAACTTCAGAGAAGCGTCGCAGGGTGACGATGACGGGTTGCACTTGAACGCCGAAGGGAAGTATGAGAAACTGATCAGACAGGTCATTGAAGTAGAAGGAGATTCTCTTGATGTCGATGCGAGTGACGTGTTTGATCACGATCCTGATTTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGACTTGGTTTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACTTCAACCTCTATGAGAAATTTGAACCCGTCTGATATTGAGAGGATGGTATCACTGAAGGGAATGGTTATAAGATGCAGTTCAATCATTCCAGAGATCAGGGAAGCTATATTTAGGTGTCTTGTGTGTAGATTCTTCTCCGAGCCAGTTCCTGTGGAGAGAGGTCGGATAACCGAGCCTACTATATGTTTGAGGGAAGAGTGCCAATCCAGAAACTCTATGACACTTGTTCACAACAGATGCAGGTTTGCTGACAAGCAAATTGTGAGAGTCCAGGAGACACCCGATGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTACTGATGCATGACAAGTTGGTGGATACTGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTTTAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTCAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACTTAAAGAAGACTGATAAGTCCAGGATGTTGGTAGAGGATGCTGTGGATGTTGATAATGGTCCAGACAAAAATGCAGAAGTTTTCTATGATGAAGAAAAGGTGGCTCAACTGAAGGAACTCTCAAAACGGCCAGATATATATGAAATACTGACAAGATCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGAGGGGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAATCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCTGTTGGATTGACTGCTTATGTAACCAAGGATCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTCGTTTTGAGTGACCGAGGTATATGCTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCTCTCAATGCTCGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTGATGAACAGACTGACAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCTGAGAGCATGGAGCAGGATGTGTTGGACATTTCTACATTAACTGATTTCGTTAGCTATGCCCGACAGCACATGCACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGCTACGTAGAAATGAGAAAAAGAGGAAACTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCAAGGCAAATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTTGAAAAACATGATGTAATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACGCTACTGGAACTATTGATATGGATCTTATAACTACTGGAGTTTCCGCAAGTGAAAGGATGAGACGAGAAAGTCTGCAACAAGCAACTCGCAACATAATCATGGATAAAATGCAGATTGGGGGACCATCTATGCGGTTATTGGAGTTGTTGGAAGAATTGAAGAAACAGGATATTGGTAACGTAGTTCATCTTAATGATCTAAGGAGTGCAATTACTACTCTAGCCACAGAAGGATTTGTTACCATGCAGGGTGACAGCGTAAAAAGATCTTGA | 2499 | 0.4622 | MASDSSPPNFNNGPSSPDDSLSSPIGNTFSSPGTRRRRRSSTPSAFGTPSERRSRFASSDATPSAPRSRQRGGGGRVPATPTSTTDDVPVSSDGGDAFDMDDARPTFVWGTNISVEDVNDAIKRFLRNFREASQGDDDGLHLNAEGKYEKLIRQVIEVEGDSLDVDASDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRCSSIIPEIREAIFRCLVCRFFSEPVPVERGRITEPTICLREECQSRNSMTLVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIFRAMSVRVGPTQRTVKSLFKTYIDCLHLKKTDKSRMLVEDAVDVDNGPDKNAEVFYDEEKVAQLKELSKRPDIYEILTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFENPESMEQDVLDISTLTDFVSYARQHMHPQLSDEAAEELTRGYVEMRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHATGTIDMDLITTGVSASERMRRESLQQATRNIIMDKMQIGGPSMRLLELLEELKKQDIGNVVHLNDLRSAITTLATEGFVTMQGDSVKRS | 832 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed2g2113 | 832 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 297 | 309 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 736 | 745 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 584 | 601 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 438 | 449 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 246 | 259 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 77 | 831 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | SMART | mcm | 220 | 736 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | ProSiteProfiles | MCM family domain profile. | 422 | 628 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 77 | 831 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Aed2g2113 | 832 | Pfam | MCM N-terminal domain | 121 | 220 | IPR027925 | - | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 537 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 463 | 478 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 575 | 587 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 602 | 610 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 551 | 564 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | Pfam | MCM P-loop domain | 410 | 632 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed2g2113 | 832 | Gene3D | - | 224 | 363 | IPR012340 | - | |
| Aed2g2113 | 832 | Pfam | MCM AAA-lid domain | 648 | 734 | IPR041562 | - | |
| Aed2g2113 | 832 | Gene3D | - | 406 | 740 | IPR027417 | - | |
| Aed2g2113 | 832 | Pfam | MCM OB domain | 224 | 353 | IPR033762 | - | |
| Aed2g2113 | 832 | CDD | MCM4 | 425 | 734 | - | - | |
| Aed2g2113 | 832 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 433 | 749 | IPR027417 | - | |
| Aed2g2113 | 832 | Gene3D | - | 112 | 219 | - | - | |
| Aed2g2113 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 143 | 374 | IPR012340 | - | |
| Aed2g2113 | 832 | Gene3D | - | 251 | 303 | - | - | |
| Aed2g2113 | 832 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Aed2g2113 | 832 | ProSitePatterns | MCM family signature. | 531 | 539 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aed2g2113 | 832 | Gene3D | - | 741 | 829 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed2g2113 | Aed-Chr2 | 25248295 | 25262592 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed2g2113 | 1 | 831 | Core DNA Replication Machinery Family | AT2G16440 | 74.353 | 0.0 | 1259 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed2g2113 | K02212 | - | gmx:100782586 | 1508.04 |