Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2079 ATGGCTTCTGCAGATGTTGAGTACCGTTGCTTCGTCGGTGGGCTCGCATGGGCCACTGACAACGATGCTCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAATCGAAGATTATCAACGATCGTGAGACTGGAAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCAATGAGCAAGCCATGAAAGATGCGATCGAAGGCATGAACGGCCAGAACCTTGACGGCCGCAACATCACTGTCAATGAAGCTCAGTCCCGCGGTGGAGGCGGCGGCGGCGGCGGTGGTGGAGGATACAGCCGTGGTGGCGGCGGTGGAGGATATGGTGGTCGTCGTGAAGGTGGAGGTGGAGGTGGCTACAGCCGTGGAGGCGGTGGGGGCTATGGTGGTGGTGGTGGAGGATATGGTGGCGGCAGTGGCGGCTATGGAGGTGGCAGGGAGCGTGGTTATGGTGGTGGCGGTGGTGGATATGGCGGTGGCAGAGACCGTGATGGTGGTGATGGTGGTGGCTGGAGAAACTAG 522 0.592 MASADVEYRCFVGGLAWATDNDALERAFSQYGEIVESKIINDRETGRSRGFGFVTFANEQAMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGYSRGGGGGGYGGRREGGGGGGYSRGGGGGYGGGGGGYGGGSGGYGGGRERGYGGGGGGYGGGRDRDGGDGGGWRN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2079 173 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 118 - -
Aed2g2079 173 PANTHER TRANSFORMER-2-RELATED 1 118 - -
Aed2g2079 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Aed2g2079 173 MobiDBLite consensus disorder prediction 82 173 - -
Aed2g2079 173 SMART rrm1_1 9 82 IPR000504 GO:0003723
Aed2g2079 173 Gene3D - 2 117 IPR012677 -
Aed2g2079 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Aed2g2079 173 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2079 Aed-Chr2 25050361 25052081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2079 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 5.21e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2079 - K13195 ccaj:109800369 166.392