Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2078 ATGGCTTCAGCAGATTCTGAGTACCGTTGCTTTGTTGGTGGGCTCGCTTGGGCCACTGACAACGACGCTCTGGAGAAAGCCTTCTCTCACTACGGTGACATCGTTGAATCGAAGATTATTAACGATCGTGAGACTGGAAGGTCCAGAGGATTCGGATTTGTGACCTTCTCCTCTGAGCAGTCAATGAAAGATGCCATCGAAGGAATGAACGGACAGAACCTTGACGGCCGTAACATCACTGTGAACGAAGCCCAGACCCGTGGTGGAGGTGGCGGCGGTGGTGGATACAACCGCGGTGGAAGTGGAGGTGGATATGGTGGTGGCGGCGGCGGCGGATATGGTGGTCGTCGTGAAGGTGGATACAACGGTGGAGGTGGAGGTGGAGGTGGAGGTTATGGCGGTGGCAGAGATCGTGGTTATGGTGATGGTGGATCTCGCTATTCTCGCGGTGGCGAAGGCGGTGGAGCCGATGGAAACTGGAGGAATTAG 489 0.5542 MASADSEYRCFVGGLAWATDNDALEKAFSHYGDIVESKIINDRETGRSRGFGFVTFSSEQSMKDAIEGMNGQNLDGRNITVNEAQTRGGGGGGGGYNRGGSGGGYGGGGGGGYGGRREGGYNGGGGGGGGGYGGGRDRGYGDGGSRYSRGGEGGGADGNWRN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2078 162 MobiDBLite consensus disorder prediction 82 162 - -
Aed2g2078 162 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 162 - -
Aed2g2078 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Aed2g2078 162 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Aed2g2078 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Aed2g2078 162 Gene3D - 2 112 IPR012677 -
Aed2g2078 162 SMART rrm1_1 9 82 IPR000504 GO:0003723
Aed2g2078 162 PANTHER GEO13361P1-RELATED 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2078 Aed-Chr2 25047465 25048498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2078 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 3.56e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2078 - K13195 ccaj:109800369 164.851