Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2058 ATGAGTAGTTTTTTGGTGTTGGTGTTTCCCTCCCCTCTGAGTTTGATGCGGTGGGGACAGGGAGGGCTTGTCTCTGTCAAGAATGTTCTTGAGATGGAAGGCAAGACAGAAAGTCATATGACATCAGCTGCGGCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTAGAGGAGTTTTCTGCAAGTGATCCTTCAACGGTCACCACCTGCAAGCATGAGTTTCACCTGCAATGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAAGCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGAAGCTTGAGGGCTACCCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCTTTGGTGATTTTGAATTGCAGCATTTGCGCATGAGTATAAATGATGCTGATTTTGAAGAGAGAATTATTCAACATCTAGCTGCTGCTGCAGCGATAAGGAGAGCTAACCAAGTTGGTTGGAGGGAAGGGCAGCGAACTCATTCACCAGCTCATGGTCATCCACAACTCTTAGTGTTCTCTAATCAGCCTATTGCACCTTCATCAAATTCTGATGCAGCATCTGCAGGAGAAAATGACCCAAATGCAATGCCTAATAGAAGTCCATCTACTGCAATAACATCCGATGGAAATGAAGCATCGCAGCAGATCCCTCACATTCAAACTCAAAGCTCTTCTTCAGCTTCTAGATCTCCTGTCATGGCTACAAATCGCCAAGGAATTTACTCTAATGATAGAGGTTCTACTGCTCGTTCTTCACCAGCAAACCAAGATAGATCAGAGCCATCAGAATTGCATTCATTTTCTGATTCTCTGCGTTCCAGATTTAATGCGGTGTCCATGCGATACAAAGAGTCAATCTCAAAGGGCGCAAGGGGATGGAAGGAGAGGTTGTTCTGTCGTAGTTCTTCCATGTCAGAACTTGGTACAGAATCAAGGAAGAGAGAGATGAATGCTGGAATTGCTAGTGTATCCCGATTGAAGGAATCCCTTGAAACTAGTGCAAATAATAGAGCTGTGGGTAATTCTTTGTCAAATCATATGGAGGATTGTTCCATGGGAGGGGTGAGCAACCAGCACAATGTTGAAGCTAGTGGAGAGAACTCTTCACATGATGACAATACTCCAGCTGCTTGTTCTGCTAGCTCACATTTAAATTGA 1233 0.4469 MSSFLVLVFPSPLSLMRWGQGGLVSVKNVLEMEGKTESHMTSAAAFVEGGIQESCDDACSICLEEFSASDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQAISLKDPTSQELFEAVEQERSLRATPSRNAAIFHHPAFGDFELQHLRMSINDADFEERIIQHLAAAAAIRRANQVGWREGQRTHSPAHGHPQLLVFSNQPIAPSSNSDAASAGENDPNAMPNRSPSTAITSDGNEASQQIPHIQTQSSSSASRSPVMATNRQGIYSNDRGSTARSSPANQDRSEPSELHSFSDSLRSRFNAVSMRYKESISKGARGWKERLFCRSSSMSELGTESRKREMNAGIASVSRLKESLETSANNRAVGNSLSNHMEDCSMGGVSNQHNVEASGENSSHDDNTPAACSASSHLN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2058 410 MobiDBLite consensus disorder prediction 366 410 - -
Aed2g2058 410 Pfam Ring finger domain 58 99 IPR001841 -
Aed2g2058 410 MobiDBLite consensus disorder prediction 199 286 - -
Aed2g2058 410 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 407 - -
Aed2g2058 410 SUPERFAMILY RING/U-box 51 107 - -
Aed2g2058 410 MobiDBLite consensus disorder prediction 199 292 - -
Aed2g2058 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 108 IPR013083 -
Aed2g2058 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 24 407 - -
Aed2g2058 410 ProSiteProfiles Zinc finger RING-type profile. 59 99 IPR001841 -
Aed2g2058 410 SMART ring_2 59 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2058 Aed-Chr2 24915577 24922172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2058 56 107 C3H Transcription Factor Family AT4G00335 44.231 8.76e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2058 K19043 - gmx:100800419 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2058 2 24915577 24922172 Aed2g2058 2 24915577 24922172 ECH