LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g2047	ATGAGTAGCCACACAGCAGTGAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCATTGGGATTCTCTTACTCATTATAACTATTACTTTAACTTCATACTTCTGCACCAGAACACATGTGTCATTTTCTCCAGCCACTAGGAATAGGAGACACACACACACCCCAAGTGGTGTCCTTGAACCACAGCACTCTATAGTTGATGTAATTAGTCTAGATGAAGCCACAATTGTGAGTTATCCAACCTTGTTGTACTCAGAAGCCAAGCTGAAGAAGTCTGATTCAACTGCAACATGTTGCTCCATATGTCTTGCAGATTACAAGGGCACTGATATGCTTCGGATGCTACCTGATTGTGGCCATCAATTCCACATCAAGTGCATAGATCCATGGTTGAGGTTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCAATACCAACACCACTCTCAACTCCTCTTGCTGAAGTGGTTCCCTTAGCAACCAGACATGATTCATAG	528	0.4356	MSSHTAVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRTHVSFSPATRNRRHTHTPSGVLEPQHSIVDVISLDEATIVSYPTLLYSEAKLKKSDSTATCCSICLADYKGTDMLRMLPDCGHQFHIKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRHDS	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g2047	175	PANTHER	RING-H2 FINGER PROTEIN ATL70-LIKE	6	173	-	-
	Aed2g2047	175	SUPERFAMILY	RING/U-box	88	156	-	-
	Aed2g2047	175	SMART	ring_2	109	150	IPR001841	-
	Aed2g2047	175	CDD	RING-H2_PA-TM-RING	108	151	-	-
	Aed2g2047	175	Pfam	Ring finger domain	109	151	IPR001841	-
	Aed2g2047	175	ProSiteProfiles	Zinc finger RING-type profile.	109	151	IPR001841	-
	Aed2g2047	175	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	71	155	IPR013083	-
	Aed2g2047	175	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	6	173	IPR045899	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g2047	Aed-Chr2	24836438	24836965	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g2047	11	171	C3H Transcription Factor Family	AT2G35910	62.112	5.47e-58	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g2047	-		-	gmx:100811799	271.166

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed2g2047	2	24836438	24836965	Aed8g0623	8	5399179	5399712	PCT