Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2046 ATGGCTAAGAAAAAGCAGAAAACAGTGATACAAAAACCGATTGGTAATGATTTTGAGTCAAGAAAAGCTTTCTACAAAGCTAGGAGACAAGTTTTGTTAAAGAAGGTGGGGGATCTTACCACCCTTTGTGACATTGATGCATGTGTAATCCTCTTTGGTCCAGGGGATGATGCTCCTATTGTGTGGCCATCAGACGACGAGACTAAAGATATGATCGACCAGTTTGAGGATGTTCCATCCACTGGTGGGTTAAGAAAAAACGTCACCCCACGGGTTTATATCGAGCGAGCGAATAACAAGCTTGAAATTCAACTTATGGAGCTTAAGAATAAGAACGATGAGAAAGTGGTGTCTAATTTCATGCATGAAATCCATCATGGTGGTAAGTCTTTATCTGATTTTGATGCTAGTCATATATCTCGTTTACTTTGTTATGTGGAGGAGAAACTGAAGGGTGTTAGAGTCAAAGCTGGCTCTTCTGAGGAACACCAACAATTACCACTGTCTCCTCCTAAACCTCCAACACCACAACTTTCTTCTCCTCCTATACAAAATATTGAACAAGTTTCCCAACAACAATCATCCTTCGATGATCTGAGCAAAACTGATGAGATCACAAATGCTGGTTTTGGTGATGTGGCGTTTCCAGCTTCATGCAATTTTGGAGGCCTCACTAATTATGAAAGTGACTCAGGGTTTGGTGTGGTGCCTCAAAGTGATTTTATATTTACCAATGGTAACAACAACAACAACAACAACAGTGATTCGGGGCTTTTCTATGGAAGCTCTTCTGGTGGAATTGGAGGAGACAATGACATATGGTCATCATCTTATGGAAATTTTGGAGGCACATTTGCTGGAAATGATGATCATATGATGCTGCCTTTCAACAATAACTTCCAAAGCAACATTAATGAATCTTTCATGGGAATAGGGCAACATTATGATGGAAATCAAGGAGGATTCATTAATAATATTGGGTTTGGAGCCAACAATGATGGAGTTGCCATAGGGAGATTCAATATTCCAAACTTTGTTGGCACCAGTACCAATGGCGGTAACTTCAACCTTGGATTTGCTTCTCATGCAAATCTAGCTAGTAACAGCGGGTGTAAGAATGAATATTGA 1128 0.4007 MAKKKQKTVIQKPIGNDFESRKAFYKARRQVLLKKVGDLTTLCDIDACVILFGPGDDAPIVWPSDDETKDMIDQFEDVPSTGGLRKNVTPRVYIERANNKLEIQLMELKNKNDEKVVSNFMHEIHHGGKSLSDFDASHISRLLCYVEEKLKGVRVKAGSSEEHQQLPLSPPKPPTPQLSSPPIQNIEQVSQQQSSFDDLSKTDEITNAGFGDVAFPASCNFGGLTNYESDSGFGVVPQSDFIFTNGNNNNNNNSDSGLFYGSSSGGIGGDNDIWSSSYGNFGGTFAGNDDHMMLPFNNNFQSNINESFMGIGQHYDGNQGGFINNIGFGANNDGVAIGRFNIPNFVGTSTNGGNFNLGFASHANLASNSGCKNEY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2046 375 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 55 IPR002100 GO:0003677|GO:0046983
Aed2g2046 375 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 14 192 - -
Aed2g2046 375 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 192 - -
Aed2g2046 375 Gene3D - 17 99 IPR036879 GO:0003677|GO:0046983
Aed2g2046 375 MobiDBLite consensus disorder prediction 156 182 - -
Aed2g2046 375 ProSiteProfiles MADS-box domain profile. 20 53 IPR002100 GO:0003677|GO:0046983
Aed2g2046 375 CDD MADS_SRF_like 4 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed2g2046 375 SMART madsneu2 3 64 IPR002100 GO:0003677|GO:0046983
Aed2g2046 375 Coils Coil 91 118 - -
Aed2g2046 375 SUPERFAMILY SRF-like 17 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2046 Aed-Chr2 24833371 24834498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2046 1 266 Type I MADS-box Gene Family AT2G40210 28.417 1.04e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed2g2046 SRF-TF 8.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2046 - - gmx:106798339 343.584