Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2045 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTTTGTGGGGGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGGTCTCAATCTGTTCATCAAGGAGAGTCTTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTGCCACCTAACTGCATAGACCAGCTTGCTGCCACTAAGCCATCATCGGCAAGAGGACCTGAACTAGTGTTGGGCAAAGGACATTCAACTCAGTTTACCATCTTTCCTGATGATGCGCAAAAGCTTCAAACAACCATATCACTGCAGTCATCATCACTTACTGATTCCCACTCCCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGCGCAAAATATCCTTATGCTGATCAATTTTACGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTTCCACTTAACATGACATCTGATGATGGACCAATTTATGTAAATGCAAAGCAATACAATGGAATCATTAGACGTCGTCAGTCTCGTGCCAAAGCTGTGCTTCATCAGAAATTGACTAAAGTTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGAGGTCGGTTCTTGAACACTAGGACATCTGTTAAAGGAAATGGTAAAAAAATTGGAAATGAAGTACTGCATAAAATTGTTGGTGAACAGCTGCAGTGTAGTGGCTCTCAGAGTTCTGAACTCCTTCAATCTGAGTTTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGTTCTGAGGTTACTAGCATGTATTCGCGCGGAGGCCTCGACAGCTTTTCTCTCAATCATCTTGCAGACATTATAGATGGCAGGCGCGGTATGAATATGATCATACCCCCCAAATGGGTTGCAGCGGTACCAGGTAACTGCTGCAACCTTAAAGTTTGA 969 0.4376 MAMQTVYLKEHEGNAHNFVGAASAPWWSAFGSQSVHQGESSCGQMKPFSLELPPNCIDQLAATKPSSARGPELVLGKGHSTQFTIFPDDAQKLQTTISLQSSSLTDSHSRFEIGFSQPMICAKYPYADQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYNGIIRRRQSRAKAVLHQKLTKVRKPYMHESRHLHAMRRPRGCGGRFLNTRTSVKGNGKKIGNEVLHKIVGEQLQCSGSQSSELLQSEFGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLADIIDGRRGMNMIIPPKWVAAVPGNCCNLKV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2045 322 Gene3D - 154 216 - -
Aed2g2045 322 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 321 - -
Aed2g2045 322 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 157 211 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 321 IPR001289 GO:0003700|GO:0006355
Aed2g2045 322 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2045 Aed-Chr2 24821410 24825418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2045 1 322 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.687 6.63e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed2g2045 CBFB_NFYA 7.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2045 K08064 - gmx:100815382 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2045 2 24821410 24825418 Aed8g0621 8 5381776 5384792 PCT