Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2044 ATGGCTGCTACGGCTTCTGTTTCCTCTTGTATCTGCAATAGAATATACAACCTTTCCTTCACGCACCCTTCCCTTTCACTCACCAGCAACTTCCCTCAACGACCCATATCCCAAAAACCACTCAGTCTAAACCTCAAATCTCAAAGTTTCAGTCTTTCCTTTCTCCCACTTCACCGTCTTCCCCCACTTTCCGCTGCTTTCGATGGGTTGGAAGTGGCTCAAGACACCACAGAGTCCCAACAAGACGAACCAGAACCAGAAACCGTTGAAAAAACAGAACAAGAGGAAGACTCGTACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCTTATTCAATCACTAATTCCGAATTGGCTGAGCTCTTTGGAGAAGCTGGCACCGTCGCGTCTGTTGAGATTGTGTATGATCGTCTCACGGATAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTTGAGGATGCTAAAGAAGCAATTCGAATGTTTGACGGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGGGAAAGGTTAGTAATGGGGCCAAAAATAAGGAACAGCTACAGAGGCTTTGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACCTCACAGGGTCTTAGAGAAGCTTTTGCTGAACAGCCGGGCGTATTGGGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTTGGGTTTGTTTCTTTTGAAACTGCTGAGTCTGCACAATCTGCTTTGGACATTATGAATGGTGTGGAGGTACAAGGTCGGGCCTTGCGGTTGAATTTGGCTGAAGCAAGGACACCTTTATCTCCTCCAGTAATTGAGAAAAATGTAGGAAGCAATGTTGAAAGCTCGGAATTGGTGTCTAGCGCCAGCACATAA 936 0.4712 MAATASVSSCICNRIYNLSFTHPSLSLTSNFPQRPISQKPLSLNLKSQSFSLSFLPLHRLPPLSAAFDGLEVAQDTTESQQDEPEPETVEKTEQEEDSYDAGRLYVGNLPYSITNSELAELFGEAGTVASVEIVYDRLTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLGAKVIYERDSGRSRGFGFVSFETAESAQSALDIMNGVEVQGRALRLNLAEARTPLSPPVIEKNVGSNVESSELVSSAST 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2044 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Aed2g2044 311 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 292 - -
Aed2g2044 311 SUPERFAMILY RNA-binding domain, RBD 202 286 IPR035979 GO:0003676
Aed2g2044 311 Gene3D - 67 185 IPR012677 -
Aed2g2044 311 Gene3D - 191 288 IPR012677 -
Aed2g2044 311 SMART rrm1_1 206 279 IPR000504 GO:0003723
Aed2g2044 311 SMART rrm1_1 103 176 IPR000504 GO:0003723
Aed2g2044 311 MobiDBLite consensus disorder prediction 78 94 - -
Aed2g2044 311 SUPERFAMILY RNA-binding domain, RBD 92 179 IPR035979 GO:0003676
Aed2g2044 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Aed2g2044 311 MobiDBLite consensus disorder prediction 72 99 - -
Aed2g2044 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Aed2g2044 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Aed2g2044 311 PANTHER OS02G0815200 PROTEIN 3 292 - -
Aed2g2044 311 CDD RRM_HP0827_like 103 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2044 Aed-Chr2 24818084 24821114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2044 100 284 Eukaryotic Initiation Factors Gene Family AT3G16380 32.804 2.16e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2044 - - gmx:100814852 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2044 2 24818084 24821114 Aed8g0241 8 2029761 2032422 PCT